Analysis of interatomic Contacts of Structural Units in PDB entry:
2GFO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GFO entry

There is 1 chain in PDB entry 2GFO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 762LEU 1109
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 2GFO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
762 766Right-handed 310
Helix 2
2
A
785 797Right-handed alpha
Helix 3
3
A
798 807Right-handed alpha
Helix 4
4
A
809 814Right-handed alpha
Helix 5
5
A
824 840Right-handed alpha
Helix 6
6
A
847 858Right-handed alpha
Helix 7
7
A
859 862Right-handed 310
Helix 8
8
A
868 885Right-handed alpha
Helix 9
9
A
902 918Right-handed alpha
Helix 10
10
A
920 927Right-handed alpha
Helix 11
11
A
964 972Right-handed alpha
Helix 12
12
A
1037 1041Right-handed 310
Helix 13
13
A
1092 1096Right-handed 310
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There are 6 sheets in PDB entry 2GFO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
768 769first strand
Strand 2
A
842 845anti-parallel
Strand 3
A
778 779parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
942 949first strand
Strand 2
A
928 936anti-parallel
Strand 3
A
994 1002anti-parallel
Strand 4
A
975 977anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
952 954first strand
Strand 2
A
1006 1011parallel
Strand 3
A
1101 1107anti-parallel
Strand 4
A
1052 1060anti-parallel
Strand 5
A
1067 1074anti-parallel
Strand 6
A
1079 1084anti-parallel
Strand 7
A
1087 1090anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
961 963first strand
Strand 2
A
1027 1029parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
983 985first strand
Strand 2
A
990 992anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1014 1016first strand
Strand 2
A
1021 1023anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il