Analysis of interatomic Contacts of Structural Units in PDB entry:
2GNZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GNZ entry

There is 1 chain in PDB entry 2GNZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 339
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 2GNZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 27Right-handed alpha
Helix 2
2
A
44 48Right-handed 310
Helix 3
3
A
62 78Right-handed alpha
Helix 4
4
A
105 110Right-handed 310
Helix 5
5
A
118 123Right-handed alpha
Helix 6
6
A
140 155Right-handed alpha
Helix 7
7
A
166 173Right-handed alpha
Helix 8
8
A
182 184Right-handed 310
Helix 9
9
A
185 190Right-handed alpha
Helix 10
10
A
252 267Right-handed alpha
Helix 11
11
A
268 273Right-handed 310
Helix 12
12
A
311 313Right-handed 310
Helix 13
13
A
314 337Right-handed alpha
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There are 3 sheets in PDB entry 2GNZ. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 161first strand
Strand 2
A
31 36parallel
Strand 3
A
2 6parallel
Strand 4
A
177 180parallel
Strand 5
A
301 309parallel
Strand 6
A
290 298anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 116first strand
Strand 2
A
130 139anti-parallel
Strand 3
A
89 98anti-parallel
Strand 4
A
212 216parallel
Strand 5
A
228 231anti-parallel
Strand 6
A
236 239anti-parallel
Strand 7
A
196 206anti-parallel
Strand 8
A
243 244anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 116first strand
Strand 2
A
130 139anti-parallel
Strand 3
A
89 98anti-parallel
Strand 4
A
212 216parallel
Strand 5
A
228 231anti-parallel
Strand 6
A
236 239anti-parallel
Strand 7
A
196 206anti-parallel
Strand 8
A
274 285anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il