Analysis of interatomic Contacts of Structural Units in PDB entry:
2GRY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GRY entry

There is 1 chain in PDB entry 2GRY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 169VAL 523
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 2GRY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
169 179Right-handed alpha
Helix 2
2
A
207 213Right-handed alpha
Helix 3
3
A
258 266Right-handed alpha
Helix 4
4
A
267 276Right-handed alpha
Helix 5
5
A
291 297Right-handed alpha
Helix 6
6
A
310 323Right-handed alpha
Helix 7
7
A
325 330Right-handed alpha
Helix 8
8
A
379 395Right-handed alpha
Helix 9
9
A
444 471Right-handed alpha
Helix 10
10
A
472 475Right-handed 310
Helix 11
11
A
476 479Right-handed 310
Helix 12
12
A
480 486Right-handed alpha
Helix 13
13
A
486 492Right-handed alpha
Helix 14
14
A
506 508Right-handed 310
Helix 15
15
A
509 522Right-handed alpha
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There are 3 sheets in PDB entry 2GRY. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 253first strand
Strand 2
A
197 203parallel
Strand 3
A
495 503parallel
Strand 4
A
279 286parallel
Strand 5
A
422 430parallel
Strand 6
A
409 417anti-parallel
Strand 7
A
334 343anti-parallel
Strand 8
A
346 349anti-parallel
Strand 9
A
356 360anti-parallel
Strand 10
A
368 370anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
251 253first strand
Strand 2
A
197 203parallel
Strand 3
A
495 503parallel
Strand 4
A
279 286parallel
Strand 5
A
422 430parallel
Strand 6
A
409 417anti-parallel
Strand 7
A
334 343anti-parallel
Strand 8
A
375 376anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 220first strand
Strand 2
A
226 234anti-parallel
Strand 3
A
240 248anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il