Analysis of interatomic Contacts of Structural Units in PDB entry:
2GYS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2GYS entry

There are 2 chains in PDB entry 2GYS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 1THR 418
B
 GLU 1THR 418
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 2GYS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 9Right-handed alpha
Helix 2
2
A
27 31Right-handed alpha
Helix 3
3
A
104 106Right-handed 310
Helix 4
4
A
141 143Right-handed 310
Helix 5
5
A
242 246Right-handed alpha
Helix 6
6
A
317 319Right-handed 310
Helix 7
7
B
3 9Right-handed alpha
Helix 8
8
B
27 31Right-handed alpha
Helix 9
9
B
104 106Right-handed 310
Helix 10
10
B
141 143Right-handed 310
Helix 11
11
B
242 246Right-handed alpha
Helix 12
12
B
317 319Right-handed 310
Helix 13
13
B
364 368Right-handed 310
Back to top of page

There are 16 sheets in PDB entry 2GYS. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 13first strand
Strand 2
A
18 26anti-parallel
Strand 3
A
67 75anti-parallel
Strand 4
A
51 53anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 48first strand
Strand 2
A
35 42anti-parallel
Strand 3
A
84 91anti-parallel
Strand 4
B
312 315anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 102first strand
Strand 2
B
300 307anti-parallel
Strand 3
B
250 256anti-parallel
Strand 4
B
269 271anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 120first strand
Strand 2
A
123 129anti-parallel
Strand 3
A
170 173anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 166first strand
Strand 2
A
145 153anti-parallel
Strand 3
A
183 192anti-parallel
Strand 4
A
209 212anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 228first strand
Strand 2
A
233 241anti-parallel
Strand 3
A
283 291anti-parallel
Strand 4
A
274 277anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 270first strand
Strand 2
A
250 255anti-parallel
Strand 3
A
300 307anti-parallel
Strand 4
B
97 102anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 315first strand
Strand 2
B
84 91anti-parallel
Strand 3
B
35 40anti-parallel
Strand 4
B
46 48anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 330first strand
Strand 2
A
337 341anti-parallel
Strand 3
A
378 380anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 374first strand
Strand 2
A
352 359anti-parallel
Strand 3
A
391 398anti-parallel
Strand 4
A
414 415anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 13first strand
Strand 2
B
19 26anti-parallel
Strand 3
B
67 73anti-parallel
Strand 4
B
51 53anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 120first strand
Strand 2
B
123 129anti-parallel
Strand 3
B
170 173anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 166first strand
Strand 2
B
145 153anti-parallel
Strand 3
B
183 192anti-parallel
Strand 4
B
209 212anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
222 228first strand
Strand 2
B
233 241anti-parallel
Strand 3
B
283 291anti-parallel
Strand 4
B
275 279anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
326 330first strand
Strand 2
B
337 341anti-parallel
Strand 3
B
378 380anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
369 374first strand
Strand 2
B
352 360anti-parallel
Strand 3
B
389 398anti-parallel
Strand 4
B
414 417anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il