Analysis of interatomic Contacts of Structural Units in PDB entry:
2HVR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2HVR entry

There are 8 chains in PDB entry 2HVR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 A 1 G 24
D
 C 125 C 134
E
 A 236 T 248
F
 A 1 G 24
G
 C 125 C 134
H
 A 236 T 248
A
 SER 0LEU 332
B
 SER 0SER 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 2HVR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 23Right-handed alpha
Helix 2
2
A
68 75Right-handed alpha
Helix 3
3
A
75 87Right-handed alpha
Helix 4
4
A
134 146Right-handed alpha
Helix 5
5
A
157 162Right-handed alpha
Helix 6
6
A
171 180Right-handed alpha
Helix 7
7
A
183 190Right-handed alpha
Helix 8
8
A
251 259Right-handed alpha
Helix 9
9
A
260 262Right-handed 310
Helix 10
10
A
263 273Right-handed alpha
Helix 11
11
A
281 300Right-handed alpha
Helix 12
12
A
309 326Right-handed alpha
Helix 13
13
A
327 329Right-handed 310
Helix 14
14
B
13 23Right-handed alpha
Helix 15
15
B
68 90Right-handed alpha
Helix 16
16
B
134 146Right-handed alpha
Helix 17
17
B
157 162Right-handed alpha
Helix 18
18
B
171 182Right-handed alpha
Helix 19
19
B
183 190Right-handed alpha
Helix 20
20
B
252 260Right-handed alpha
Helix 21
21
B
263 272Right-handed alpha
Helix 22
22
B
281 299Right-handed alpha
Helix 23
23
B
311 334Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 2HVR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 10first strand
Strand 2
A
224 227parallel
Strand 3
A
205 210anti-parallel
Strand 4
A
30 34anti-parallel
Strand 5
A
152 156anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 58first strand
Strand 2
A
50 54anti-parallel
Strand 3
A
39 46anti-parallel
Strand 4
A
91 101anti-parallel
Strand 5
A
115 125anti-parallel
Strand 6
A
130 132anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 58first strand
Strand 2
A
50 54anti-parallel
Strand 3
A
39 46anti-parallel
Strand 4
A
91 101anti-parallel
Strand 5
A
115 125anti-parallel
Strand 6
A
148 149parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 10first strand
Strand 2
B
224 227parallel
Strand 3
B
205 210anti-parallel
Strand 4
B
30 35anti-parallel
Strand 5
B
152 154anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 53first strand
Strand 2
B
39 46anti-parallel
Strand 3
B
91 101anti-parallel
Strand 4
B
115 125anti-parallel
Strand 5
B
130 132anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 53first strand
Strand 2
B
39 46anti-parallel
Strand 3
B
91 101anti-parallel
Strand 4
B
115 125anti-parallel
Strand 5
B
148 149parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
215 216first strand
Strand 2
B
220 221anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il