Analysis of interatomic Contacts of Structural Units in PDB entry:
2I06


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2I06 entry

There are 3 chains in PDB entry 2I06 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 T 311 T 325
C
 A 329 A 342
A
 ASP 5ASP 309
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 2I06. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 29Right-handed alpha
Helix 2
2
A
45 49Right-handed 310
Helix 3
3
A
63 74Right-handed alpha
Helix 4
4
A
78 82Right-handed 310
Helix 5
5
A
103 130Right-handed alpha
Helix 6
6
A
138 147Right-handed alpha
Helix 7
7
A
151 157Right-handed alpha
Helix 8
8
A
182 194Right-handed alpha
Helix 9
9
A
205 221Right-handed alpha
Helix 10
10
A
266 268Right-handed 310
Helix 11
11
A
283 285Right-handed 310
Helix 12
12
A
301 303Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 2I06. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 62first strand
Strand 2
A
33 40anti-parallel
Strand 3
A
96 102anti-parallel
Strand 4
A
259 264parallel
Strand 5
A
161 163parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 56first strand
Strand 2
A
280 281anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 254first strand
Strand 2
A
237 244anti-parallel
Strand 3
A
167 173anti-parallel
Strand 4
A
273 274parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 181first strand
Strand 2
A
228 233anti-parallel
Strand 3
A
305 308anti-parallel
Strand 4
A
296 300anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il