Analysis of interatomic Contacts of Structural Units in PDB entry:
2IBI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2IBI entry

There are 2 chains in PDB entry 2IBI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ALA 263SER 600
B
MET 1GLY 75
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 2IBI. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
275 287Right-handed alpha
Helix 2
2
A
288 297Right-handed alpha
Helix 3
3
A
299 304Right-handed alpha
Helix 4
4
A
311 327Right-handed alpha
Helix 5
5
A
336 347Right-handed alpha
Helix 6
6
A
348 351Right-handed 310
Helix 7
7
A
357 373Right-handed alpha
Helix 8
8
A
391 405Right-handed alpha
Helix 9
9
A
409 416Right-handed alpha
Helix 10
10
A
455 463Right-handed alpha
Helix 11
11
A
469 473Right-handed 310
Helix 12
12
A
529 532Right-handed 310
Helix 13
13
A
582 586Right-handed 310
Helix 14
14
B
22 35Right-handed alpha
Helix 15
15
B
37 41Right-handed 310
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There are 7 sheets in PDB entry 2IBI. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
268 269first strand
Strand 2
A
333 334parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
431 438first strand
Strand 2
A
417 425anti-parallel
Strand 3
A
485 493anti-parallel
Strand 4
A
466 468anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
441 443first strand
Strand 2
A
497 502parallel
Strand 3
A
591 598anti-parallel
Strand 4
A
540 551anti-parallel
Strand 5
A
526 527anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
441 443first strand
Strand 2
A
497 502parallel
Strand 3
A
591 598anti-parallel
Strand 4
A
540 551anti-parallel
Strand 5
A
556 563anti-parallel
Strand 6
A
570 574anti-parallel
Strand 7
A
577 581anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
453 454first strand
Strand 2
A
519 520parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
475 476first strand
Strand 2
A
481 482anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
12 16first strand
Strand 2
B
2 6anti-parallel
Strand 3
B
66 70parallel
Strand 4
B
42 45anti-parallel
Strand 5
B
48 49anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il