Analysis of interatomic Contacts of Structural Units in PDB entry:
2J05


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J05 entry

There are 2 chains in PDB entry 2J05 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 278ARG 341
B
 ARG 281GLY 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 2J05

There are 2 sheets in PDB entry 2J05. Click on sheet of interest to get list of strands forming it: AA, BA,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
328 332first strand
Strand 2
A
317 322anti-parallel
Strand 3
A
306 312anti-parallel
Strand 4
A
283 286anti-parallel
Strand 5
A
336 338anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
327 332first strand
Strand 2
B
317 322anti-parallel
Strand 3
B
306 311anti-parallel
Strand 4
B
283 286anti-parallel
Strand 5
B
336 338anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il