Analysis of interatomic Contacts of Structural Units in PDB entry:
2J0U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J0U entry

There are 3 chains in PDB entry 2J0U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 38ALA 408
B
 PRO 38VAL 407
T
 ARG 217GLU 225
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 2J0U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
40 44Right-handed 310
Helix 2
2
A
46 56Right-handed alpha
Helix 3
3
A
62 75Right-handed alpha
Helix 4
4
A
89 100Right-handed alpha
Helix 5
5
A
115 131Right-handed alpha
Helix 6
6
A
145 155Right-handed alpha
Helix 7
7
A
163 173Right-handed alpha
Helix 8
8
A
188 194Right-handed alpha
Helix 9
9
A
197 207Right-handed alpha
Helix 10
10
A
222 233Right-handed alpha
Helix 11
11
A
263 272Right-handed alpha
Helix 12
12
A
286 300Right-handed alpha
Helix 13
13
A
312 326Right-handed alpha
Helix 14
14
A
359 365Right-handed alpha
Helix 15
15
A
382 384Right-handed 310
Helix 16
16
A
385 397Right-handed alpha
Helix 17
17
B
40 44Right-handed 310
Helix 18
18
B
46 56Right-handed alpha
Helix 19
19
B
62 74Right-handed alpha
Helix 20
20
B
89 100Right-handed alpha
Helix 21
21
B
115 131Right-handed alpha
Helix 22
22
B
149 155Right-handed alpha
Helix 23
23
B
163 173Right-handed alpha
Helix 24
24
B
188 193Right-handed alpha
Helix 25
25
B
197 207Right-handed alpha
Helix 26
26
B
222 233Right-handed alpha
Helix 27
27
B
263 271Right-handed alpha
Helix 28
28
B
271 279Right-handed alpha
Helix 29
29
B
286 298Right-handed alpha
Helix 30
30
B
315 326Right-handed alpha
Helix 31
31
B
360 365Right-handed alpha
Helix 32
32
B
382 384Right-handed 310
Helix 33
33
B
385 397Right-handed alpha
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There are 4 sheets in PDB entry 2J0U. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 140first strand
Strand 2
A
159 162parallel
Strand 3
A
109 112parallel
Strand 4
A
183 186parallel
Strand 5
A
213 218parallel
Strand 6
A
78 81parallel
Strand 7
A
237 239parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
304 307first strand
Strand 2
A
330 333parallel
Strand 3
A
280 283parallel
Strand 4
A
348 351parallel
Strand 5
A
376 381parallel
Strand 6
A
252 257parallel
Strand 7
A
401 402parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 139first strand
Strand 2
B
159 162parallel
Strand 3
B
109 112parallel
Strand 4
B
183 186parallel
Strand 5
B
213 217parallel
Strand 6
B
78 80parallel
Strand 7
B
237 239parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
330 331first strand
Strand 2
B
280 283parallel
Strand 3
B
348 351parallel
Strand 4
B
375 381parallel
Strand 5
B
251 257parallel
Strand 6
B
401 402parallel
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