Analysis of interatomic Contacts of Structural Units in PDB entry:
2J2M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J2M entry

There are 4 chains in PDB entry 2J2M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LYS 6PHE 485
B
LYS 6PHE 485
C
LYS 6PHE 485
D
LYS 6PHE 485
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 76 helices in PDB entry 2J2M. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
35 46Right-handed alpha
Helix 2
2
A
78 82Right-handed 310
Helix 3
3
A
138 140Right-handed 310
Helix 4
4
A
141 150Right-handed alpha
Helix 5
5
A
159 170Right-handed alpha
Helix 6
6
A
173 181Right-handed alpha
Helix 7
7
A
182 186Right-handed 310
Helix 8
8
A
189 193Right-handed 310
Helix 9
9
A
227 238Right-handed alpha
Helix 10
10
A
240 252Right-handed alpha
Helix 11
11
A
266 273Right-handed 310
Helix 12
12
A
306 312Right-handed alpha
Helix 13
13
A
329 347Right-handed alpha
Helix 14
14
A
350 354Right-handed 310
Helix 15
15
A
395 399Right-handed 310
Helix 16
16
A
421 431Right-handed alpha
Helix 17
17
A
432 448Right-handed alpha
Helix 18
18
A
452 467Right-handed alpha
Helix 19
19
A
467 478Right-handed alpha
Helix 20
20
B
35 46Right-handed alpha
Helix 21
21
B
78 82Right-handed 310
Helix 22
22
B
138 140Right-handed 310
Helix 23
23
B
141 150Right-handed alpha
Helix 24
24
B
159 170Right-handed alpha
Helix 25
25
B
173 181Right-handed alpha
Helix 26
26
B
182 186Right-handed 310
Helix 27
27
B
189 193Right-handed 310
Helix 28
28
B
227 238Right-handed alpha
Helix 29
29
B
240 252Right-handed alpha
Helix 30
30
B
266 273Right-handed 310
Helix 31
31
B
306 312Right-handed alpha
Helix 32
32
B
329 347Right-handed alpha
Helix 33
33
B
350 354Right-handed 310
Helix 34
34
B
395 399Right-handed 310
Helix 35
35
B
421 431Right-handed alpha
Helix 36
36
B
432 448Right-handed alpha
Helix 37
37
B
452 467Right-handed alpha
Helix 38
38
B
467 479Right-handed alpha
Helix 39
39
C
35 46Right-handed alpha
Helix 40
40
C
78 82Right-handed 310
Helix 41
41
C
138 140Right-handed 310
Helix 42
42
C
141 150Right-handed alpha
Helix 43
43
C
159 170Right-handed alpha
Helix 44
44
C
173 181Right-handed alpha
Helix 45
45
C
182 186Right-handed 310
Helix 46
46
C
189 193Right-handed 310
Helix 47
47
C
227 238Right-handed alpha
Helix 48
48
C
240 252Right-handed alpha
Helix 49
49
C
266 270Right-handed 310
Helix 50
50
C
305 310Right-handed alpha
Helix 51
51
C
329 347Right-handed alpha
Helix 52
52
C
350 354Right-handed 310
Helix 53
53
C
395 399Right-handed 310
Helix 54
54
C
421 431Right-handed alpha
Helix 55
55
C
432 448Right-handed alpha
Helix 56
56
C
452 467Right-handed alpha
Helix 57
57
C
467 479Right-handed alpha
Helix 58
58
D
35 46Right-handed alpha
Helix 59
59
D
78 82Right-handed 310
Helix 60
60
D
138 140Right-handed 310
Helix 61
61
D
141 150Right-handed alpha
Helix 62
62
D
159 170Right-handed alpha
Helix 63
63
D
173 181Right-handed alpha
Helix 64
64
D
182 186Right-handed 310
Helix 65
65
D
189 193Right-handed 310
Helix 66
66
D
227 238Right-handed alpha
Helix 67
67
D
240 252Right-handed alpha
Helix 68
68
D
266 270Right-handed 310
Helix 69
69
D
305 310Right-handed alpha
Helix 70
70
D
331 347Right-handed alpha
Helix 71
71
D
350 354Right-handed 310
Helix 72
72
D
395 399Right-handed 310
Helix 73
73
D
421 431Right-handed alpha
Helix 74
74
D
432 448Right-handed alpha
Helix 75
75
D
452 467Right-handed alpha
Helix 76
76
D
467 479Right-handed alpha
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There are 8 sheets in PDB entry 2J2M. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, DA,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
23 24first strand
Strand 2
B
409 412anti-parallel
Strand 3
C
403 404anti-parallel
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There are 11 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
59 68first strand
Strand 2
A
87 95anti-parallel
Strand 3
A
112 119anti-parallel
Strand 4
A
122 129anti-parallel
Strand 5
A
195 196anti-parallel
Strand 6
A
210 219anti-parallel
Strand 7
A
257 265anti-parallel
Strand 8
A
292 302anti-parallel
Strand 9
A
59 68anti-parallel
Strand 10
A
87 95anti-parallel
Strand 11
A
59 68anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
403 404first strand
Strand 2
D
409 412anti-parallel
Strand 3
C
23 24anti-parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
23 24first strand
Strand 2
A
409 412anti-parallel
Strand 3
D
403 404anti-parallel
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There are 11 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
59 68first strand
Strand 2
B
87 95anti-parallel
Strand 3
B
112 119anti-parallel
Strand 4
B
122 129anti-parallel
Strand 5
B
195 196anti-parallel
Strand 6
B
210 219anti-parallel
Strand 7
B
257 265anti-parallel
Strand 8
B
292 302anti-parallel
Strand 9
B
59 68anti-parallel
Strand 10
B
87 95anti-parallel
Strand 11
B
59 68anti-parallel
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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
403 404first strand
Strand 2
C
409 412anti-parallel
Strand 3
D
23 24anti-parallel
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There are 22 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
59 68first strand
Strand 2
C
87 95anti-parallel
Strand 3
C
112 119anti-parallel
Strand 4
C
122 129anti-parallel
Strand 5
C
87 95first strand
Strand 6
C
59 68anti-parallel
Strand 7
C
112 119first strand
Strand 8
C
87 95anti-parallel
Strand 9
C
122 129first strand
Strand 10
C
112 119anti-parallel
Strand 11
C
195 196first strand
Strand 12
C
122 129anti-parallel
Strand 13
C
201 204first strand
Strand 14
C
210 219anti-parallel
Strand 15
C
210 219first strand
Strand 16
C
195 196anti-parallel
Strand 17
C
257 265first strand
Strand 18
C
210 219anti-parallel
Strand 19
C
292 302first strand
Strand 20
C
59 68anti-parallel
Strand 21
C
324 326first strand
Strand 22
C
201 204anti-parallel
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There are 20 strands in DA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
59 68first strand
Strand 2
D
87 95anti-parallel
Strand 3
D
87 95first strand
Strand 4
D
59 68anti-parallel
Strand 5
D
112 119first strand
Strand 6
D
87 95anti-parallel
Strand 7
D
122 129first strand
Strand 8
D
112 119anti-parallel
Strand 9
D
195 196first strand
Strand 10
D
122 129anti-parallel
Strand 11
D
201 204first strand
Strand 12
D
210 219anti-parallel
Strand 13
D
210 219first strand
Strand 14
D
195 196anti-parallel
Strand 15
D
257 265first strand
Strand 16
D
210 219anti-parallel
Strand 17
D
291 302first strand
Strand 18
D
59 68anti-parallel
Strand 19
D
324 326first strand
Strand 20
D
201 204anti-parallel
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