Analysis of interatomic Contacts of Structural Units in PDB entry:
2J2Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J2Z entry

There are 2 chains in PDB entry 2J2Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1GLU 217
B
 ARG 24GLU 173
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 2J2Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
73 78Right-handed 310
Helix 2
2
A
117 121Right-handed 310
Helix 3
3
A
128 131Right-handed 310
Helix 4
4
A
159 166Right-handed alpha
Helix 5
5
B
53 59Right-handed alpha
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There are 6 sheets in PDB entry 2J2Z. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 4first strand
Strand 2
A
17 24anti-parallel
Strand 3
A
64 71anti-parallel
Strand 4
A
50 53anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 12first strand
Strand 2
A
102 116parallel
Strand 3
A
84 93anti-parallel
Strand 4
A
31 38anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 12first strand
Strand 2
A
102 116parallel
Strand 3
B
162 172parallel
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There are 8 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 173first strand
Strand 2
A
151 157anti-parallel
Strand 3
A
190 193anti-parallel
Strand 4
A
202 208anti-parallel
Strand 5
A
211 214anti-parallel
Strand 6
A
133 137anti-parallel
Strand 7
A
140 145anti-parallel
Strand 8
A
177 182anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 39first strand
Strand 2
B
66 73anti-parallel
Strand 3
B
143 152anti-parallel
Strand 4
B
114 119anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 79first strand
Strand 2
B
82 83anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il