Analysis of interatomic Contacts of Structural Units in PDB entry:
2J3N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J3N entry

There are 6 chains in PDB entry 2J3N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 10GLY 496
B
LYS 9ALA 495
C
SER 10GLY 499
D
LYS 9GLY 499
E
SER 10GLY 499
F
LYS 9GLN 494
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 94 helices in PDB entry 2J3N. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
21 33Right-handed alpha
Helix 2
2
A
57 63Right-handed alpha
Helix 3
3
A
63 86Right-handed alpha
Helix 4
4
A
97 123Right-handed alpha
Helix 5
5
A
172 177Right-handed alpha
Helix 6
6
A
179 184Right-handed alpha
Helix 7
7
A
199 212Right-handed alpha
Helix 8
8
A
229 243Right-handed alpha
Helix 9
9
A
342 360Right-handed alpha
Helix 10
10
A
386 395Right-handed alpha
Helix 11
11
A
408 412Right-handed 310
Helix 12
12
A
430 432Right-handed 310
Helix 13
13
A
444 457Right-handed alpha
Helix 14
14
A
461 467Right-handed alpha
Helix 15
15
A
475 482Right-handed 310
Helix 16
16
B
21 34Right-handed alpha
Helix 17
17
B
57 63Right-handed alpha
Helix 18
18
B
63 86Right-handed alpha
Helix 19
19
B
97 122Right-handed alpha
Helix 20
20
B
172 177Right-handed alpha
Helix 21
21
B
179 184Right-handed alpha
Helix 22
22
B
199 212Right-handed alpha
Helix 23
23
B
229 243Right-handed alpha
Helix 24
24
B
342 360Right-handed alpha
Helix 25
25
B
386 395Right-handed alpha
Helix 26
26
B
408 412Right-handed 310
Helix 27
27
B
430 432Right-handed 310
Helix 28
28
B
444 457Right-handed alpha
Helix 29
29
B
461 468Right-handed alpha
Helix 30
30
B
474 481Right-handed 310
Helix 31
31
B
486 489Right-handed 310
Helix 32
32
C
21 33Right-handed alpha
Helix 33
33
C
56 63Right-handed alpha
Helix 34
34
C
63 87Right-handed alpha
Helix 35
35
C
97 123Right-handed alpha
Helix 36
36
C
172 177Right-handed alpha
Helix 37
37
C
179 184Right-handed alpha
Helix 38
38
C
199 212Right-handed alpha
Helix 39
39
C
229 243Right-handed alpha
Helix 40
40
C
342 360Right-handed alpha
Helix 41
41
C
386 395Right-handed alpha
Helix 42
42
C
408 412Right-handed 310
Helix 43
43
C
430 432Right-handed 310
Helix 44
44
C
444 458Right-handed alpha
Helix 45
45
C
461 468Right-handed alpha
Helix 46
46
C
474 481Right-handed 310
Helix 47
47
D
21 32Right-handed alpha
Helix 48
48
D
33 35Right-handed 310
Helix 49
49
D
57 63Right-handed alpha
Helix 50
50
D
63 87Right-handed alpha
Helix 51
51
D
97 123Right-handed alpha
Helix 52
52
D
172 177Right-handed alpha
Helix 53
53
D
179 184Right-handed alpha
Helix 54
54
D
199 212Right-handed alpha
Helix 55
55
D
229 243Right-handed alpha
Helix 56
56
D
302 306Right-handed 310
Helix 57
57
D
342 360Right-handed alpha
Helix 58
58
D
386 395Right-handed alpha
Helix 59
59
D
408 412Right-handed 310
Helix 60
60
D
430 432Right-handed 310
Helix 61
61
D
444 457Right-handed alpha
Helix 62
62
D
461 468Right-handed alpha
Helix 63
63
D
474 481Right-handed 310
Helix 64
64
E
21 34Right-handed alpha
Helix 65
65
E
57 62Right-handed alpha
Helix 66
66
E
63 87Right-handed alpha
Helix 67
67
E
97 122Right-handed alpha
Helix 68
68
E
172 177Right-handed alpha
Helix 69
69
E
179 184Right-handed alpha
Helix 70
70
E
199 212Right-handed alpha
Helix 71
71
E
229 243Right-handed alpha
Helix 72
72
E
302 306Right-handed 310
Helix 73
73
E
342 360Right-handed alpha
Helix 74
74
E
386 395Right-handed alpha
Helix 75
75
E
408 412Right-handed 310
Helix 76
76
E
430 432Right-handed 310
Helix 77
77
E
444 457Right-handed alpha
Helix 78
78
E
461 468Right-handed alpha
Helix 79
79
E
474 481Right-handed 310
Helix 80
80
F
21 33Right-handed alpha
Helix 81
81
F
56 63Right-handed alpha
Helix 82
82
F
63 86Right-handed alpha
Helix 83
83
F
97 123Right-handed alpha
Helix 84
84
F
172 177Right-handed alpha
Helix 85
85
F
179 184Right-handed alpha
Helix 86
86
F
199 212Right-handed alpha
Helix 87
87
F
229 243Right-handed alpha
Helix 88
88
F
342 360Right-handed alpha
Helix 89
89
F
386 395Right-handed alpha
Helix 90
90
F
408 413Right-handed alpha
Helix 91
91
F
430 432Right-handed 310
Helix 92
92
F
444 457Right-handed alpha
Helix 93
93
F
461 468Right-handed alpha
Helix 94
94
F
475 479Right-handed 310
Back to top of page

There are 34 sheets in PDB entry 2J3N. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, BA, BB, BC, BD, BE, BF, CA, CB, CC, CD, CE, CF, CG, A, DB, C, DD, DE, EA, EB, EC, ED, FA, FB, FC, FD, FE, FF,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
126 128first strand
Strand 2
A
38 41parallel
Strand 3
A
13 18parallel
Strand 4
A
149 159parallel
Strand 5
A
139 143anti-parallel
Strand 6
A
131 136anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
126 128first strand
Strand 2
A
38 41parallel
Strand 3
A
13 18parallel
Strand 4
A
149 159parallel
Strand 5
A
329 331parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
163 165first strand
Strand 2
A
293 295anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
246 249first strand
Strand 2
A
216 220parallel
Strand 3
A
193 196parallel
Strand 4
A
286 289parallel
Back to list of sheets
Back to top of page

There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
251 260first strand
Strand 2
A
266 273anti-parallel
Strand 3
A
279 284anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
372 374first strand
Strand 2
A
380 384anti-parallel
Strand 3
A
435 441anti-parallel
Strand 4
A
421 428anti-parallel
Strand 5
A
399 406anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
125 128first strand
Strand 2
B
38 41parallel
Strand 3
B
13 18parallel
Strand 4
B
149 159parallel
Strand 5
B
139 143anti-parallel
Strand 6
B
131 136anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
125 128first strand
Strand 2
B
38 41parallel
Strand 3
B
13 18parallel
Strand 4
B
149 159parallel
Strand 5
B
329 331parallel
Back to list of sheets
Back to top of page

There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
163 165first strand
Strand 2
B
293 295anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
246 249first strand
Strand 2
B
216 220parallel
Strand 3
B
193 196parallel
Strand 4
B
286 289parallel
Back to list of sheets
Back to top of page

There are 3 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
251 260first strand
Strand 2
B
266 273anti-parallel
Strand 3
B
279 284anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
372 374first strand
Strand 2
B
380 384anti-parallel
Strand 3
B
434 441anti-parallel
Strand 4
B
421 428anti-parallel
Strand 5
B
399 406anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
126 128first strand
Strand 2
C
38 41parallel
Strand 3
C
13 18parallel
Strand 4
C
149 159parallel
Strand 5
C
139 143anti-parallel
Strand 6
C
131 136anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
126 128first strand
Strand 2
C
38 41parallel
Strand 3
C
13 18parallel
Strand 4
C
149 159parallel
Strand 5
C
329 331parallel
Back to list of sheets
Back to top of page

There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
95 96first strand
Strand 2
D
88 89anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
163 165first strand
Strand 2
C
293 295anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in CE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
246 249first strand
Strand 2
C
216 220parallel
Strand 3
C
193 196parallel
Strand 4
C
286 288parallel
Back to list of sheets
Back to top of page

There are 3 strands in CF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
251 257first strand
Strand 2
C
267 273anti-parallel
Strand 3
C
279 284anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in CG sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
372 374first strand
Strand 2
C
380 384anti-parallel
Strand 3
C
434 441anti-parallel
Strand 4
C
421 428anti-parallel
Strand 5
C
399 406anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
126 128first strand
Strand 2
D
38 41parallel
Strand 3
D
13 18parallel
Strand 4
D
149 159parallel
Strand 5
D
131 136first strand
Strand 6
D
139 143anti-parallel
Strand 7
D
149 159anti-parallel
Strand 8
D
329 331parallel
Strand 9
D
149 159parallel
Back to list of sheets
Back to top of page

There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
163 165first strand
Strand 2
D
293 295anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
246 249first strand
Strand 2
D
216 220parallel
Strand 3
D
193 196parallel
Strand 4
D
286 289parallel
Back to list of sheets
Back to top of page

There are 3 strands in DD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
251 260first strand
Strand 2
D
266 273anti-parallel
Strand 3
D
279 284anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in DE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
372 374first strand
Strand 2
D
380 384anti-parallel
Strand 3
D
435 441anti-parallel
Strand 4
D
421 428anti-parallel
Strand 5
D
399 406anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
126 128first strand
Strand 2
E
38 41parallel
Strand 3
E
13 18parallel
Strand 4
E
149 159parallel
Strand 5
E
131 136first strand
Strand 6
E
139 143anti-parallel
Strand 7
E
149 159anti-parallel
Strand 8
E
329 331parallel
Strand 9
E
149 159parallel
Back to list of sheets
Back to top of page

There are 4 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
246 249first strand
Strand 2
E
216 220parallel
Strand 3
E
193 196parallel
Strand 4
E
286 289parallel
Back to list of sheets
Back to top of page

There are 6 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
251 258first strand
Strand 2
E
267 273anti-parallel
Strand 3
E
279 280anti-parallel
Strand 4
E
267 273anti-parallel
Strand 5
E
283 284anti-parallel
Strand 6
E
267 273anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in ED sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
372 374first strand
Strand 2
E
380 384anti-parallel
Strand 3
E
435 441anti-parallel
Strand 4
E
421 428anti-parallel
Strand 5
E
399 406anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
126 128first strand
Strand 2
F
38 41parallel
Strand 3
F
15 18parallel
Strand 4
F
157 159parallel
Strand 5
F
329 331parallel
Back to list of sheets
Back to top of page

There are 3 strands in FB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
131 136first strand
Strand 2
F
139 143anti-parallel
Strand 3
F
149 153anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in FC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
163 165first strand
Strand 2
F
293 295anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in FD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
246 249first strand
Strand 2
F
216 220parallel
Strand 3
F
193 196parallel
Strand 4
F
286 289parallel
Back to list of sheets
Back to top of page

There are 3 strands in FE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
251 260first strand
Strand 2
F
266 273anti-parallel
Strand 3
F
280 284anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in FF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
372 374first strand
Strand 2
F
380 384anti-parallel
Strand 3
F
434 441anti-parallel
Strand 4
F
421 428anti-parallel
Strand 5
F
399 406anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il