Analysis of interatomic Contacts of Structural Units in PDB entry:
2J3T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J3T entry

There are 4 chains in PDB entry 2J3T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 15LEU 175
B
ALA 2SER 159
C
THR 2ARG 143
D
ALA 2GLY 216
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 2J3T. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
16 34Right-handed alpha
Helix 2
2
A
36 64Right-handed alpha
Helix 3
3
A
70 81Right-handed alpha
Helix 4
4
A
81 88Right-handed alpha
Helix 5
5
A
128 141Right-handed alpha
Helix 6
6
A
153 157Right-handed 310
Helix 7
7
B
3 19Right-handed alpha
Helix 8
8
B
26 30Right-handed 310
Helix 9
9
B
34 52Right-handed alpha
Helix 10
10
B
61 72Right-handed alpha
Helix 11
11
B
72 79Right-handed alpha
Helix 12
12
B
115 119Right-handed 310
Helix 13
13
B
120 134Right-handed alpha
Helix 14
14
C
30 53Right-handed alpha
Helix 15
15
C
93 103Right-handed alpha
Helix 16
16
C
104 109Right-handed alpha
Helix 17
17
C
123 135Right-handed alpha
Helix 18
18
D
81 86Right-handed alpha
Helix 19
19
D
87 92Right-handed 310
Helix 20
20
D
104 125Right-handed alpha
Helix 21
21
D
165 182Right-handed alpha
Helix 22
22
D
195 210Right-handed alpha
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There are 5 sheets in PDB entry 2J3T. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A, DB,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
92 94first strand
Strand 2
A
102 107anti-parallel
Strand 3
A
161 170anti-parallel
Strand 4
A
144 152anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
84 88first strand
Strand 2
B
92 97anti-parallel
Strand 3
B
149 155anti-parallel
Strand 4
B
139 146anti-parallel
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There are 10 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
15 20first strand
Strand 2
C
3 9anti-parallel
Strand 3
C
81 86anti-parallel
Strand 4
C
70 75anti-parallel
Strand 5
C
61 65anti-parallel
Strand 6
D
136 139anti-parallel
Strand 7
D
143 148anti-parallel
Strand 8
D
154 159anti-parallel
Strand 9
D
3 9anti-parallel
Strand 10
D
15 20anti-parallel
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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
28 32first strand
Strand 2
D
94 99anti-parallel
Strand 3
D
62 66anti-parallel
Strand 4
D
69 70anti-parallel
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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
39 42first strand
Strand 2
D
47 51anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il