Analysis of interatomic Contacts of Structural Units in PDB entry:
2J82


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J82 entry

There is 1 chain in PDB entry 2J82 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1001VAL 1240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 2J82. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1040 1065Right-handed alpha
Helix 2
2
A
1067 1088Right-handed alpha
Helix 3
3
A
1138 1143Right-handed alpha
Helix 4
4
A
1192 1197Right-handed alpha
Helix 5
5
A
1200 1209Right-handed alpha
Helix 6
6
A
1212 1227Right-handed alpha
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There are 3 sheets in PDB entry 2J82. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1002 1008first strand
Strand 2
A
1233 1239anti-parallel
Strand 3
A
1187 1191anti-parallel
Strand 4
A
1121 1126anti-parallel
Strand 5
A
1129 1132anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1018 1022first strand
Strand 2
A
1029 1036anti-parallel
Strand 3
A
1100 1105anti-parallel
Strand 4
A
1111 1117anti-parallel
Strand 5
A
1176 1181anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1018 1022first strand
Strand 2
A
1029 1036anti-parallel
Strand 3
A
1097 1098anti-parallel
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