Analysis of interatomic Contacts of Structural Units in PDB entry:
2J9L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2J9L entry

There are 6 chains in PDB entry 2J9L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 578VAL 751
B
 HIS 578PHE 753
C
 HIS 578GLN 754
D
 HIS 578LEU 752
E
 HIS 578VAL 751
F
 HIS 578LEU 749
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 2J9L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
581 586Right-handed alpha
Helix 2
2
A
605 615Right-handed alpha
Helix 3
3
A
637 649Right-handed alpha
Helix 4
4
A
695 707Right-handed alpha
Helix 5
5
A
725 736Right-handed alpha
Helix 6
6
B
581 586Right-handed alpha
Helix 7
7
B
605 615Right-handed alpha
Helix 8
8
B
637 651Right-handed alpha
Helix 9
9
B
695 707Right-handed alpha
Helix 10
10
B
725 737Right-handed alpha
Helix 11
11
B
744 750Right-handed alpha
Helix 12
12
C
581 586Right-handed alpha
Helix 13
13
C
605 615Right-handed alpha
Helix 14
14
C
637 649Right-handed alpha
Helix 15
15
C
695 707Right-handed alpha
Helix 16
16
C
725 736Right-handed alpha
Helix 17
17
C
745 754Right-handed alpha
Helix 18
18
D
581 586Right-handed alpha
Helix 19
19
D
604 615Right-handed alpha
Helix 20
20
D
637 650Right-handed alpha
Helix 21
21
D
695 707Right-handed alpha
Helix 22
22
D
725 737Right-handed alpha
Helix 23
23
D
744 752Right-handed alpha
Helix 24
24
E
582 585Right-handed 310
Helix 25
25
E
605 615Right-handed alpha
Helix 26
26
E
637 648Right-handed alpha
Helix 27
27
E
695 707Right-handed alpha
Helix 28
28
E
725 737Right-handed alpha
Helix 29
29
E
746 751Right-handed alpha
Helix 30
30
F
582 585Right-handed 310
Helix 31
31
F
605 613Right-handed alpha
Helix 32
32
F
637 648Right-handed alpha
Helix 33
33
F
680 683Right-handed 310
Helix 34
34
F
695 707Right-handed alpha
Helix 35
35
F
725 735Right-handed alpha
Helix 36
36
F
745 749Right-handed 310
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There are 18 sheets in PDB entry 2J9L. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, CC, A, DB, C, EA, EB, EC, FA, FB, FC,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
598 599first strand
Strand 2
A
619 623parallel
Strand 3
A
631 636anti-parallel
Strand 4
A
683 684anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
603 604first strand
Strand 2
A
659 661anti-parallel
Strand 3
A
677 678parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
689 691first strand
Strand 2
A
710 715parallel
Strand 3
A
718 724anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
598 599first strand
Strand 2
B
619 623parallel
Strand 3
B
631 636anti-parallel
Strand 4
B
683 684anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
603 604first strand
Strand 2
B
659 661anti-parallel
Strand 3
B
677 678parallel
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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
689 691first strand
Strand 2
B
710 715parallel
Strand 3
B
718 724anti-parallel
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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
598 599first strand
Strand 2
C
619 623parallel
Strand 3
C
631 636anti-parallel
Strand 4
C
683 684anti-parallel
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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
603 604first strand
Strand 2
C
659 661anti-parallel
Strand 3
C
677 678parallel
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There are 3 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
689 691first strand
Strand 2
C
710 715parallel
Strand 3
C
718 724anti-parallel
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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
598 599first strand
Strand 2
D
619 623parallel
Strand 3
D
631 636anti-parallel
Strand 4
D
683 684anti-parallel
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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
660 661first strand
Strand 2
D
677 678parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
689 691first strand
Strand 2
D
710 715parallel
Strand 3
D
718 724anti-parallel
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There are 4 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
598 599first strand
Strand 2
E
619 623parallel
Strand 3
E
631 636anti-parallel
Strand 4
E
683 684anti-parallel
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There are 3 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
603 604first strand
Strand 2
E
659 661anti-parallel
Strand 3
E
677 678parallel
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There are 3 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
689 691first strand
Strand 2
E
710 715parallel
Strand 3
E
718 724anti-parallel
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There are 3 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
598 599first strand
Strand 2
F
619 623parallel
Strand 3
F
631 636anti-parallel
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There are 3 strands in FB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
603 604first strand
Strand 2
F
659 661anti-parallel
Strand 3
F
677 678parallel
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There are 3 strands in FC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
689 691first strand
Strand 2
F
710 715parallel
Strand 3
F
718 724anti-parallel
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