Analysis of interatomic Contacts of Structural Units in PDB entry:
2JA6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2JA6 entry

There are 17 chains in PDB entry 2JA6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 2	PRO 1455
B	PHE 18	PHE 1224
C	SER 2	ASP 268
D	SER 4	TYR 221
E	ASP 2	MET 215
F	LEU 69	LEU 155
G	MET 1	ILE 171
H	SER 2	ARG 146
I	THR 2	LYS 117
J	MET 1	PRO 65
K	MET 1	LEU 114
L	ALA 25	ARG 70
N	T 0	T 7
P	U 0	G 9
T	A 10	T 16
T	T 19	C 21
T	G 23	T 29

There are138 helices in PDB entry 2JA6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	23	31	Right-handed alpha
Helix 2	2	A	95	104	Right-handed alpha
Helix 3	3	A	119	125	Right-handed alpha
Helix 4	4	A	130	135	Right-handed alpha
Helix 5	5	A	137	143	Right-handed alpha
Helix 6	6	A	203	213	Right-handed alpha
Helix 7	7	A	215	222	Right-handed alpha
Helix 8	8	A	230	234	Right-handed 310
Helix 9	9	A	243	247	Right-handed 310
Helix 10	10	A	261	278	Right-handed alpha
Helix 11	11	A	285	289	Right-handed 310
Helix 12	12	A	293	303	Right-handed alpha
Helix 13	13	A	324	330	Right-handed alpha
Helix 14	14	A	334	340	Right-handed alpha
Helix 15	15	A	368	372	Right-handed alpha
Helix 16	16	A	384	395	Right-handed alpha
Helix 17	17	A	474	479	Right-handed alpha
Helix 18	18	A	494	503	Right-handed alpha
Helix 19	19	A	506	511	Right-handed alpha
Helix 20	20	A	524	534	Right-handed alpha
Helix 21	21	A	543	553	Right-handed alpha
Helix 22	22	A	574	582	Right-handed alpha
Helix 23	23	A	618	623	Right-handed alpha
Helix 24	24	A	628	637	Right-handed alpha
Helix 25	25	A	638	661	Right-handed alpha
Helix 26	26	A	665	670	Right-handed 310
Helix 27	27	A	672	696	Right-handed alpha
Helix 28	28	A	709	737	Right-handed alpha
Helix 29	29	A	741	750	Right-handed alpha
Helix 30	30	A	754	763	Right-handed alpha
Helix 31	31	A	793	798	Right-handed alpha
Helix 32	32	A	809	846	Right-handed alpha
Helix 33	33	A	867	871	Right-handed 310
Helix 34	34	A	889	898	Right-handed alpha
Helix 35	35	A	924	947	Right-handed alpha
Helix 36	36	A	959	971	Right-handed alpha
Helix 37	37	A	982	995	Right-handed alpha
Helix 38	38	A	1004	1014	Right-handed alpha
Helix 39	39	A	1015	1026	Right-handed alpha
Helix 40	40	A	1027	1034	Right-handed alpha
Helix 41	41	A	1038	1057	Right-handed alpha
Helix 42	42	A	1063	1074	Right-handed alpha
Helix 43	43	A	1097	1107	Right-handed alpha
Helix 44	44	A	1127	1139	Right-handed alpha
Helix 45	45	A	1143	1145	Right-handed 310
Helix 46	46	A	1166	1174	Right-handed alpha
Helix 47	47	A	1198	1205	Right-handed alpha
Helix 48	48	A	1208	1221	Right-handed alpha
Helix 49	49	A	1255	1260	Right-handed alpha
Helix 50	50	A	1261	1267	Right-handed alpha
Helix 51	51	A	1312	1317	Right-handed alpha
Helix 52	52	A	1331	1338	Right-handed alpha
Helix 53	53	A	1340	1359	Right-handed alpha
Helix 54	54	A	1365	1375	Right-handed alpha
Helix 55	55	A	1395	1401	Right-handed alpha
Helix 56	56	A	1404	1414	Right-handed alpha
Helix 57	57	A	1423	1431	Right-handed alpha
Helix 58	58	A	1436	1440	Right-handed 310
Helix 59	59	A	1448	1453	Right-handed alpha
Helix 60	60	B	26	41	Right-handed alpha
Helix 61	61	B	44	56	Right-handed alpha
Helix 62	62	B	57	64	Right-handed alpha
Helix 63	63	B	113	121	Right-handed alpha
Helix 64	64	B	179	183	Right-handed 310
Helix 65	65	B	185	191	Right-handed alpha
Helix 66	66	B	282	289	Right-handed alpha
Helix 67	67	B	295	302	Right-handed alpha
Helix 68	68	B	307	322	Right-handed alpha
Helix 69	69	B	326	337	Right-handed alpha
Helix 70	70	B	345	359	Right-handed alpha
Helix 71	71	B	370	390	Right-handed alpha
Helix 72	72	B	400	402	Right-handed 310
Helix 73	73	B	408	436	Right-handed alpha
Helix 74	74	B	450	464	Right-handed alpha
Helix 75	75	B	487	496	Right-handed alpha
Helix 76	76	B	551	560	Right-handed alpha
Helix 77	77	B	570	574	Right-handed 310
Helix 78	78	B	592	605	Right-handed alpha
Helix 79	79	B	619	621	Right-handed 310
Helix 80	80	B	654	660	Right-handed alpha
Helix 81	81	B	661	667	Right-handed alpha
Helix 82	82	B	680	687	Right-handed alpha
Helix 83	83	B	695	699	Right-handed alpha
Helix 84	84	B	744	749	Right-handed 310
Helix 85	85	B	752	756	Right-handed 310
Helix 86	86	B	763	774	Right-handed alpha
Helix 87	87	B	783	788	Right-handed 310
Helix 88	88	B	808	812	Right-handed 310
Helix 89	89	B	843	848	Right-handed alpha
Helix 90	90	B	889	893	Right-handed 310
Helix 91	91	B	1013	1017	Right-handed 310
Helix 92	92	B	1022	1039	Right-handed alpha
Helix 93	93	B	1051	1061	Right-handed alpha
Helix 94	94	B	1098	1102	Right-handed 310
Helix 95	95	B	1121	1125	Right-handed 310
Helix 96	96	B	1131	1142	Right-handed alpha
Helix 97	97	B	1143	1152	Right-handed alpha
Helix 98	98	B	1197	1210	Right-handed alpha
Helix 99	99	C	26	40	Right-handed alpha
Helix 100	100	C	59	70	Right-handed alpha
Helix 101	101	C	76	80	Right-handed 310
Helix 102	102	C	82	86	Right-handed 310
Helix 103	103	C	116	118	Right-handed 310
Helix 104	104	C	196	201	Right-handed alpha
Helix 105	105	C	204	208	Right-handed 310
Helix 106	106	C	241	265	Right-handed alpha
Helix 107	107	D	30	34	Right-handed 310
Helix 108	108	D	54	70	Right-handed alpha
Helix 109	109	D	119	134	Right-handed alpha
Helix 110	110	D	138	151	Right-handed alpha
Helix 111	111	D	158	168	Right-handed alpha
Helix 112	112	D	175	183	Right-handed alpha
Helix 113	113	D	187	194	Right-handed alpha
Helix 114	114	D	203	216	Right-handed alpha
Helix 115	115	E	2	26	Right-handed alpha
Helix 116	116	E	39	44	Right-handed alpha
Helix 117	117	E	54	58	Right-handed 310
Helix 118	118	E	67	72	Right-handed alpha
Helix 119	119	E	90	104	Right-handed alpha
Helix 120	120	E	137	141	Right-handed alpha
Helix 121	121	E	143	147	Right-handed 310
Helix 122	122	E	157	169	Right-handed alpha
Helix 123	123	E	171	175	Right-handed 310
Helix 124	124	E	182	189	Right-handed alpha
Helix 125	125	F	86	103	Right-handed alpha
Helix 126	126	F	116	125	Right-handed alpha
Helix 127	127	G	14	18	Right-handed 310
Helix 128	128	G	21	33	Right-handed alpha
Helix 129	129	G	113	115	Right-handed 310
Helix 130	130	I	20	23	Right-handed 310
Helix 131	131	J	16	27	Right-handed alpha
Helix 132	132	J	31	40	Right-handed alpha
Helix 133	133	J	43	53	Right-handed alpha
Helix 134	134	J	56	62	Right-handed alpha
Helix 135	135	K	5	9	Right-handed 310
Helix 136	136	K	39	49	Right-handed alpha
Helix 137	137	K	50	52	Right-handed 310
Helix 138	138	K	82	110	Right-handed alpha

There are 45 sheets in PDB entry 2JA6. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, DA, BA, BB, BC, BD, BE, BF, BG, BH, BI, BJ, BK, BL, BM, CA, CB, CC, CD, CE, DB, EA, EB, GA, GB, HA, IA, IB, KA,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1418	1419	first strand
Strand 2	A	16	21	anti-parallel
Strand 3	B	1212	1217	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	90	first strand
Strand 2	A	236	241	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	107	first strand
Strand 2	A	112	113	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	152	first strand
Strand 2	A	162	163	anti-parallel

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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	173	177	first strand
Strand 2	A	180	184	anti-parallel
Strand 3	A	199	201	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	345	first strand
Strand 2	B	1128	1130	anti-parallel

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There are 14 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	355	first strand
Strand 2	B	1104	1106	anti-parallel
Strand 3	A	363	367	first strand
Strand 4	A	455	463	parallel
Strand 5	A	441	445	anti-parallel
Strand 6	A	455	463	anti-parallel
Strand 7	A	455	463	first strand
Strand 8	A	363	367	parallel
Strand 9	A	467	470	anti-parallel
Strand 10	A	348	355	parallel
Strand 11	A	486	490	anti-parallel
Strand 12	A	348	355	anti-parallel
Strand 13	B	1104	1106	anti-parallel
Strand 14	A	348	355	anti-parallel

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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	379	first strand
Strand 2	A	431	435	anti-parallel
Strand 3	A	402	407	anti-parallel
Strand 4	A	411	414	anti-parallel

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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	512	513	first strand
Strand 2	A	518	519	anti-parallel

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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	540	542	first strand
Strand 2	A	571	573	anti-parallel

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There are 3 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	587	589	first strand
Strand 2	A	606	608	anti-parallel
Strand 3	A	611	614	anti-parallel

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There are 2 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	766	767	first strand
Strand 2	A	799	800	anti-parallel

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There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	849	851	first strand
Strand 2	A	855	857	anti-parallel

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There are 2 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	879	882	first strand
Strand 2	A	953	956	anti-parallel

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There are 3 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1117	1119	first strand
Strand 2	A	1303	1307	anti-parallel
Strand 3	A	1283	1287	anti-parallel

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There are 5 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1224	1228	first strand
Strand 2	A	1237	1242	anti-parallel
Strand 3	A	1191	1197	anti-parallel
Strand 4	A	1147	1154	anti-parallel
Strand 5	I	42	45	anti-parallel

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There are 2 strands in AQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1290	1292	first strand
Strand 2	A	1298	1300	anti-parallel

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There are 11 strands in DA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	49	50	first strand
Strand 2	G	2	13	anti-parallel
Strand 3	G	68	79	anti-parallel
Strand 4	F	143	147	first strand
Strand 5	F	132	137	anti-parallel
Strand 6	A	1442	1445	anti-parallel
Strand 7	G	59	61	anti-parallel
Strand 8	G	68	79	anti-parallel
Strand 9	G	38	39	first strand
Strand 10	G	43	48	anti-parallel
Strand 11	G	68	79	anti-parallel

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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	97	first strand
Strand 2	B	127	133	anti-parallel
Strand 3	B	165	169	anti-parallel

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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	203	205	first strand
Strand 2	B	208	211	anti-parallel
Strand 3	B	481	482	anti-parallel

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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	404	407	first strand
Strand 2	B	214	218	anti-parallel
Strand 3	B	498	499	parallel

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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	223	227	first strand
Strand 2	B	236	242	anti-parallel
Strand 3	B	252	256	anti-parallel
Strand 4	B	270	272	anti-parallel
Strand 5	B	280	281	anti-parallel

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There are 7 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	544	545	first strand
Strand 2	B	633	639	anti-parallel
Strand 3	B	690	694	anti-parallel
Strand 4	B	633	639	anti-parallel
Strand 5	B	703	704	first strand
Strand 6	B	740	742	parallel
Strand 7	B	633	639	anti-parallel

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There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	563	564	first strand
Strand 2	B	589	590	anti-parallel

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There are 4 strands in BG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	585	586	first strand
Strand 2	B	579	582	anti-parallel
Strand 3	B	623	627	parallel
Strand 4	B	614	617	anti-parallel

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There are 2 strands in BH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	820	827	first strand
Strand 2	B	1086	1093	anti-parallel

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There are 3 strands in BI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	838	842	first strand
Strand 2	B	988	994	parallel
Strand 3	B	979	980	anti-parallel

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There are 4 strands in BJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	853	862	first strand
Strand 2	B	961	972	anti-parallel
Strand 3	B	947	957	anti-parallel
Strand 4	B	904	905	anti-parallel

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There are 2 strands in BK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	910	912	first strand
Strand 2	B	939	940	anti-parallel

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There are 2 strands in BL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	915	916	first strand
Strand 2	B	935	936	anti-parallel

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There are 2 strands in BM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1159	1163	first strand
Strand 2	B	1191	1195	anti-parallel

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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	8	first strand
Strand 2	C	17	23	anti-parallel
Strand 3	C	228	233	anti-parallel
Strand 4	C	176	177	anti-parallel

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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	46	first strand
Strand 2	C	157	160	anti-parallel
Strand 3	C	97	100	anti-parallel
Strand 4	C	119	120	anti-parallel

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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	49	first strand
Strand 2	L	67	68	anti-parallel

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There are 3 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	54	first strand
Strand 2	C	152	154	anti-parallel
Strand 3	C	102	104	anti-parallel

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There are 2 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	114	first strand
Strand 2	C	143	147	anti-parallel

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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	38	first strand
Strand 2	D	44	46	anti-parallel

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There are 4 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	60	62	first strand
Strand 2	E	78	81	anti-parallel
Strand 3	E	107	112	parallel
Strand 4	E	131	136	parallel

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There are 3 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	177	178	first strand
Strand 2	E	207	214	parallel
Strand 3	E	196	201	anti-parallel

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There are 10 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	85	95	first strand
Strand 2	G	142	153	anti-parallel
Strand 3	G	98	102	first strand
Strand 4	G	85	95	anti-parallel
Strand 5	G	107	111	first strand
Strand 6	G	98	102	anti-parallel
Strand 7	G	142	153	first strand
Strand 8	G	85	95	anti-parallel
Strand 9	G	156	162	first strand
Strand 10	G	107	111	parallel

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There are 2 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	130	131	first strand
Strand 2	G	136	137	anti-parallel

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There are 7 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	54	58	first strand
Strand 2	H	7	16	anti-parallel
Strand 3	H	24	30	anti-parallel
Strand 4	H	37	42	anti-parallel
Strand 5	H	121	127	anti-parallel
Strand 6	H	112	118	anti-parallel
Strand 7	H	104	106	anti-parallel

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There are 3 strands in IA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	15	18	first strand
Strand 2	I	25	28	anti-parallel
Strand 3	I	35	37	anti-parallel

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There are 2 strands in IB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	70	71	first strand
Strand 2	I	83	84	anti-parallel

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There are 4 strands in KA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	21	23	first strand
Strand 2	K	31	36	anti-parallel
Strand 3	K	70	77	anti-parallel
Strand 4	K	56	62	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2JA6

Analysis of interatomic Contacts of Structural Units in PDB entry:
2JA6