Analysis of interatomic Contacts of Structural Units in PDB entry:
2JAJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JAJ entry

There are 2 chains in PDB entry 2JAJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 8LYS 281
B
 GLY -4LYS 281
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 2JAJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
23 28Right-handed alpha
Helix 2
2
A
38 55Right-handed alpha
Helix 3
3
A
75 78Right-handed 310
Helix 4
4
A
94 99Right-handed 310
Helix 5
5
A
100 111Right-handed alpha
Helix 6
6
A
126 128Right-handed 310
Helix 7
7
A
146 157Right-handed alpha
Helix 8
8
A
172 175Right-handed 310
Helix 9
9
A
190 203Right-handed alpha
Helix 10
10
A
215 220Right-handed 310
Helix 11
11
A
241 249Right-handed alpha
Helix 12
12
A
261 266Right-handed alpha
Helix 13
13
A
271 275Right-handed 310
Helix 14
14
B
23 28Right-handed alpha
Helix 15
15
B
38 55Right-handed alpha
Helix 16
16
B
75 78Right-handed 310
Helix 17
17
B
94 99Right-handed 310
Helix 18
18
B
100 111Right-handed alpha
Helix 19
19
B
126 128Right-handed 310
Helix 20
20
B
146 157Right-handed alpha
Helix 21
21
B
172 175Right-handed 310
Helix 22
22
B
195 204Right-handed alpha
Helix 23
23
B
241 249Right-handed alpha
Helix 24
24
B
263 268Right-handed 310
Helix 25
25
B
271 275Right-handed 310
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There are 10 sheets in PDB entry 2JAJ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 64first strand
Strand 2
A
14 18parallel
Strand 3
A
276 278anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
80 83first strand
Strand 2
A
86 89anti-parallel
Strand 3
A
114 117parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 132first strand
Strand 2
A
136 141anti-parallel
Strand 3
A
161 166parallel
Strand 4
B
-3 -2anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 181first strand
Strand 2
A
184 188anti-parallel
Strand 3
A
209 213parallel
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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 226first strand
Strand 2
A
230 235anti-parallel
Strand 3
A
255 258parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 64first strand
Strand 2
B
14 18parallel
Strand 3
B
276 278anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
80 83first strand
Strand 2
B
86 89anti-parallel
Strand 3
B
114 117parallel
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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 132first strand
Strand 2
B
137 141anti-parallel
Strand 3
B
162 166parallel
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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
177 181first strand
Strand 2
B
184 188anti-parallel
Strand 3
B
209 213parallel
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There are 3 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
222 226first strand
Strand 2
B
230 236anti-parallel
Strand 3
B
255 259parallel
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