Analysis of interatomic Contacts of Structural Units in PDB entry:
2JG8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JG8 entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 2JG8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLN 90SER 222
B
ALA 91MET 224
C
LYS 87ASP 217
D
GLN 90SER 222
E
THR 92MET 224
F
LYS 89ASP 217
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There is 1 helix in PDB entry 2JG8. Click on helix number for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
C
87 91Right-handed 310
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There are 14 sheets in PDB entry 2JG8. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, CA, CB, A, DB, C, EA, EB, FA, FB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
113 118first strand
Strand 2
A
94 98anti-parallel
Strand 3
A
213 221anti-parallel
Strand 4
A
135 145anti-parallel
Strand 5
A
177 187anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
122 123first strand
Strand 2
A
128 130anti-parallel
Strand 3
A
192 202anti-parallel
Strand 4
A
149 157anti-parallel
Strand 5
A
166 169anti-parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
122 123first strand
Strand 2
A
128 130anti-parallel
Strand 3
A
192 202anti-parallel
Strand 4
A
149 157anti-parallel
Strand 5
A
160 162anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
117 122first strand
Strand 2
B
96 100anti-parallel
Strand 3
B
214 222anti-parallel
Strand 4
B
139 149anti-parallel
Strand 5
B
179 189anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
133 134first strand
Strand 2
B
194 203anti-parallel
Strand 3
B
153 160anti-parallel
Strand 4
B
164 172anti-parallel
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There are 5 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
114 117first strand
Strand 2
C
93 97anti-parallel
Strand 3
C
208 216anti-parallel
Strand 4
C
136 146anti-parallel
Strand 5
C
173 183anti-parallel
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There are 5 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
123 124first strand
Strand 2
C
129 131anti-parallel
Strand 3
C
188 197anti-parallel
Strand 4
C
150 156anti-parallel
Strand 5
C
159 166anti-parallel
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There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
113 118first strand
Strand 2
D
94 98anti-parallel
Strand 3
D
213 221anti-parallel
Strand 4
D
135 145anti-parallel
Strand 5
D
177 187anti-parallel
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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
128 130first strand
Strand 2
D
192 202anti-parallel
Strand 3
D
149 157anti-parallel
Strand 4
D
166 169anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
128 130first strand
Strand 2
D
192 202anti-parallel
Strand 3
D
149 157anti-parallel
Strand 4
D
160 162anti-parallel
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There are 5 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
117 122first strand
Strand 2
E
96 100anti-parallel
Strand 3
E
214 222anti-parallel
Strand 4
E
139 149anti-parallel
Strand 5
E
179 189anti-parallel
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There are 4 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
133 134first strand
Strand 2
E
194 198anti-parallel
Strand 3
E
153 160anti-parallel
Strand 4
E
165 172anti-parallel
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There are 5 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
114 117first strand
Strand 2
F
93 97anti-parallel
Strand 3
F
207 216anti-parallel
Strand 4
F
136 146anti-parallel
Strand 5
F
173 183anti-parallel
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There are 4 strands in FB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
130 131first strand
Strand 2
F
188 197anti-parallel
Strand 3
F
150 156anti-parallel
Strand 4
F
159 166anti-parallel
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