Analysis of interatomic Contacts of Structural Units in PDB entry:
2JGB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JGB entry

There are 2 chains in PDB entry 2JGB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 45PHE 234
B
 ARG 51PRO 66
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 8 helices in PDB entry 2JGB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
74 81Right-handed alpha
Helix 2
2
A
91 99Right-handed alpha
Helix 3
3
A
103 107Right-handed 310
Helix 4
4
A
143 157Right-handed alpha
Helix 5
5
A
189 204Right-handed alpha
Helix 6
6
A
217 223Right-handed alpha
Helix 7
7
B
55 62Right-handed alpha
Helix 8
8
B
63 65Right-handed 310
Back to top of page

There is 1 sheet ( AA) in PDB entry 2JGB.

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 90first strand
Strand 2
A
55 67anti-parallel
Strand 3
A
110 117anti-parallel
Strand 4
A
166 173anti-parallel
Strand 5
A
178 184anti-parallel
Strand 6
A
133 139anti-parallel
Strand 7
A
212 216anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il