Analysis of interatomic Contacts of Structural Units in PDB entry:
2JGD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JGD entry

There are 2 chains in PDB entry 2JGD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 84GLU 933
B
 THR 85GLU 933
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 80 helices in PDB entry 2JGD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
84 103Right-handed alpha
Helix 2
2
A
104 107Right-handed 310
Helix 3
3
A
125 130Right-handed 310
Helix 4
4
A
153 166Right-handed alpha
Helix 5
5
A
177 189Right-handed alpha
Helix 6
6
A
196 221Right-handed alpha
Helix 7
7
A
234 248Right-handed alpha
Helix 8
8
A
262 270Right-handed alpha
Helix 9
9
A
274 283Right-handed alpha
Helix 10
10
A
295 299Right-handed 310
Helix 11
11
A
325 339Right-handed alpha
Helix 12
12
A
345 347Right-handed 310
Helix 13
13
A
357 363Right-handed alpha
Helix 14
14
A
364 373Right-handed alpha
Helix 15
15
A
407 414Right-handed 310
Helix 16
16
A
426 445Right-handed alpha
Helix 17
17
A
473 479Right-handed alpha
Helix 18
18
A
482 493Right-handed alpha
Helix 19
19
A
498 516Right-handed alpha
Helix 20
20
A
527 531Right-handed 310
Helix 21
21
A
533 537Right-handed 310
Helix 22
22
A
550 561Right-handed alpha
Helix 23
23
A
571 586Right-handed alpha
Helix 24
24
A
592 606Right-handed alpha
Helix 25
25
A
640 644Right-handed 310
Helix 26
26
A
660 675Right-handed alpha
Helix 27
27
A
686 692Right-handed 310
Helix 28
28
A
693 700Right-handed alpha
Helix 29
29
A
703 709Right-handed alpha
Helix 30
30
A
733 740Right-handed alpha
Helix 31
31
A
753 767Right-handed alpha
Helix 32
32
A
779 784Right-handed 310
Helix 33
33
A
790 797Right-handed alpha
Helix 34
34
A
810 814Right-handed 310
Helix 35
35
A
823 835Right-handed alpha
Helix 36
36
A
852 861Right-handed alpha
Helix 37
37
A
862 864Right-handed 310
Helix 38
38
A
881 891Right-handed alpha
Helix 39
39
A
914 931Right-handed alpha
Helix 40
40
B
85 103Right-handed alpha
Helix 41
41
B
104 107Right-handed 310
Helix 42
42
B
120 124Right-handed 310
Helix 43
43
B
124 129Right-handed 310
Helix 44
44
B
131 136Right-handed 310
Helix 45
45
B
153 165Right-handed alpha
Helix 46
46
B
177 189Right-handed alpha
Helix 47
47
B
196 221Right-handed alpha
Helix 48
48
B
234 248Right-handed alpha
Helix 49
49
B
262 270Right-handed alpha
Helix 50
50
B
274 283Right-handed alpha
Helix 51
51
B
295 299Right-handed 310
Helix 52
52
B
325 340Right-handed alpha
Helix 53
53
B
345 347Right-handed 310
Helix 54
54
B
357 363Right-handed alpha
Helix 55
55
B
364 373Right-handed alpha
Helix 56
56
B
409 414Right-handed 310
Helix 57
57
B
426 445Right-handed alpha
Helix 58
58
B
474 479Right-handed alpha
Helix 59
59
B
482 494Right-handed alpha
Helix 60
60
B
498 516Right-handed alpha
Helix 61
61
B
527 531Right-handed 310
Helix 62
62
B
533 537Right-handed 310
Helix 63
63
B
550 561Right-handed alpha
Helix 64
64
B
571 586Right-handed alpha
Helix 65
65
B
592 607Right-handed alpha
Helix 66
66
B
640 644Right-handed 310
Helix 67
67
B
660 675Right-handed alpha
Helix 68
68
B
686 692Right-handed 310
Helix 69
69
B
693 700Right-handed alpha
Helix 70
70
B
703 709Right-handed alpha
Helix 71
71
B
733 741Right-handed alpha
Helix 72
72
B
753 767Right-handed alpha
Helix 73
73
B
779 784Right-handed 310
Helix 74
74
B
790 797Right-handed alpha
Helix 75
75
B
810 814Right-handed 310
Helix 76
76
B
823 835Right-handed alpha
Helix 77
77
B
852 861Right-handed alpha
Helix 78
78
B
862 864Right-handed 310
Helix 79
79
B
881 893Right-handed alpha
Helix 80
80
B
914 931Right-handed alpha
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There are 10 sheets in PDB entry 2JGD. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 140first strand
Strand 2
A
150 152anti-parallel
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There are 9 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 171first strand
Strand 2
A
419 423anti-parallel
Strand 3
A
448 453parallel
Strand 4
A
384 389parallel
Strand 5
A
349 356parallel
Strand 6
A
253 257parallel
Strand 7
A
310 316parallel
Strand 8
A
301 307anti-parallel
Strand 9
A
523 524anti-parallel
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There are 7 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
652 655first strand
Strand 2
A
611 615parallel
Strand 3
A
679 683parallel
Strand 4
A
715 719parallel
Strand 5
A
773 777parallel
Strand 6
A
747 749parallel
Strand 7
A
847 849anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
630 631first strand
Strand 2
A
638 639anti-parallel
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There are 5 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
802 803first strand
Strand 2
A
840 845anti-parallel
Strand 3
A
816 820parallel
Strand 4
A
868 876parallel
Strand 5
A
898 904parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
138 140first strand
Strand 2
B
150 152anti-parallel
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There are 9 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 171first strand
Strand 2
B
419 423anti-parallel
Strand 3
B
448 453parallel
Strand 4
B
384 389parallel
Strand 5
B
349 356parallel
Strand 6
B
253 257parallel
Strand 7
B
310 316parallel
Strand 8
B
301 307anti-parallel
Strand 9
B
523 524anti-parallel
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There are 7 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
652 656first strand
Strand 2
B
611 615parallel
Strand 3
B
679 683parallel
Strand 4
B
715 719parallel
Strand 5
B
773 777parallel
Strand 6
B
747 749parallel
Strand 7
B
847 849anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
630 631first strand
Strand 2
B
638 639anti-parallel
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There are 5 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
802 803first strand
Strand 2
B
840 845anti-parallel
Strand 3
B
816 820parallel
Strand 4
B
868 876parallel
Strand 5
B
898 904parallel
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