Analysis of interatomic Contacts of Structural Units in PDB entry:
2JGZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JGZ entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 3 chains in PDB entry 2JGZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 0TYR 159
A
 HIS 161ASP 288
B
 CYS 167LEU 426
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 29 helices in PDB entry 2JGZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
45 58Right-handed alpha
Helix 2
2
A
87 94Right-handed alpha
Helix 3
3
A
100 120Right-handed alpha
Helix 4
4
A
129 131Right-handed 310
Helix 5
5
A
165 169Right-handed 310
Helix 6
6
A
170 175Right-handed alpha
Helix 7
7
A
182 199Right-handed alpha
Helix 8
8
A
207 220Right-handed alpha
Helix 9
9
A
229 233Right-handed 310
Helix 10
10
A
247 252Right-handed alpha
Helix 11
11
A
256 266Right-handed alpha
Helix 12
12
A
276 281Right-handed alpha
Helix 13
13
A
282 287Right-handed 310
Helix 14
14
B
170 185Right-handed alpha
Helix 15
15
B
198 217Right-handed alpha
Helix 16
16
B
219 235Right-handed alpha
Helix 17
17
B
240 242Right-handed 310
Helix 18
18
B
243 260Right-handed alpha
Helix 19
19
B
265 273Right-handed alpha
Helix 20
20
B
278 294Right-handed alpha
Helix 21
21
B
301 312Right-handed alpha
Helix 22
22
B
316 331Right-handed alpha
Helix 23
23
B
332 337Right-handed 310
Helix 24
24
B
340 356Right-handed alpha
Helix 25
25
B
362 369Right-handed alpha
Helix 26
26
B
372 392Right-handed alpha
Helix 27
27
B
398 404Right-handed alpha
Helix 28
28
B
406 410Right-handed 310
Helix 29
29
B
411 415Right-handed 310
Back to top of page

There are 3 sheets in PDB entry 2JGZ. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 12first strand
Strand 2
A
17 23anti-parallel
Strand 3
A
29 36anti-parallel
Strand 4
A
75 81anti-parallel
Strand 5
A
66 72anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 86first strand
Strand 2
A
133 135anti-parallel
Strand 3
A
141 143anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 124first strand
Strand 2
A
150 151anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il