Analysis of interatomic Contacts of Structural Units in PDB entry:
2JIF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JIF entry

There are 4 chains in PDB entry 2JIF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ALA 52TYR 432
B
THR 56TYR 432
C
THR 56TYR 432
D
ALA 52TYR 432
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 2JIF. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
58 76Right-handed alpha
Helix 2
2
A
79 87Right-handed alpha
Helix 3
3
A
90 100Right-handed alpha
Helix 4
4
A
108 112Right-handed 310
Helix 5
5
A
117 130Right-handed alpha
Helix 6
6
A
132 145Right-handed alpha
Helix 7
7
A
145 154Right-handed alpha
Helix 8
8
A
155 169Right-handed alpha
Helix 9
9
A
184 188Right-handed 310
Helix 10
10
A
224 230Right-handed 310
Helix 11
11
A
281 319Right-handed alpha
Helix 12
12
A
329 359Right-handed alpha
Helix 13
13
A
363 390Right-handed alpha
Helix 14
14
A
391 394Right-handed 310
Helix 15
15
A
399 408Right-handed alpha
Helix 16
16
A
409 412Right-handed 310
Helix 17
17
A
416 432Right-handed alpha
Helix 18
18
B
58 76Right-handed alpha
Helix 19
19
B
79 87Right-handed alpha
Helix 20
20
B
90 100Right-handed alpha
Helix 21
21
B
108 112Right-handed 310
Helix 22
22
B
117 132Right-handed alpha
Helix 23
23
B
132 145Right-handed alpha
Helix 24
24
B
145 154Right-handed alpha
Helix 25
25
B
155 167Right-handed alpha
Helix 26
26
B
184 188Right-handed 310
Helix 27
27
B
224 230Right-handed 310
Helix 28
28
B
281 319Right-handed alpha
Helix 29
29
B
329 359Right-handed alpha
Helix 30
30
B
363 390Right-handed alpha
Helix 31
31
B
391 394Right-handed 310
Helix 32
32
B
399 408Right-handed alpha
Helix 33
33
B
409 412Right-handed 310
Helix 34
34
B
416 432Right-handed alpha
Helix 35
35
C
58 76Right-handed alpha
Helix 36
36
C
79 87Right-handed alpha
Helix 37
37
C
90 100Right-handed alpha
Helix 38
38
C
108 112Right-handed 310
Helix 39
39
C
117 132Right-handed alpha
Helix 40
40
C
132 145Right-handed alpha
Helix 41
41
C
145 154Right-handed alpha
Helix 42
42
C
155 167Right-handed alpha
Helix 43
43
C
184 188Right-handed 310
Helix 44
44
C
224 230Right-handed 310
Helix 45
45
C
281 319Right-handed alpha
Helix 46
46
C
329 360Right-handed alpha
Helix 47
47
C
363 390Right-handed alpha
Helix 48
48
C
391 394Right-handed 310
Helix 49
49
C
399 408Right-handed alpha
Helix 50
50
C
409 412Right-handed 310
Helix 51
51
C
416 432Right-handed alpha
Helix 52
52
D
58 76Right-handed alpha
Helix 53
53
D
79 87Right-handed alpha
Helix 54
54
D
90 100Right-handed alpha
Helix 55
55
D
108 112Right-handed 310
Helix 56
56
D
117 132Right-handed alpha
Helix 57
57
D
132 145Right-handed alpha
Helix 58
58
D
145 154Right-handed alpha
Helix 59
59
D
155 169Right-handed alpha
Helix 60
60
D
184 188Right-handed 310
Helix 61
61
D
224 230Right-handed 310
Helix 62
62
D
281 319Right-handed alpha
Helix 63
63
D
329 359Right-handed alpha
Helix 64
64
D
363 390Right-handed alpha
Helix 65
65
D
391 394Right-handed 310
Helix 66
66
D
399 408Right-handed alpha
Helix 67
67
D
409 412Right-handed 310
Helix 68
68
D
416 432Right-handed alpha
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There are 12 sheets in PDB entry 2JIF. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, CC, A, DB, C,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
172 175first strand
Strand 2
A
216 222parallel
Strand 3
A
232 238anti-parallel
Strand 4
A
275 276anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
191 195first strand
Strand 2
A
198 209anti-parallel
Strand 3
A
260 271anti-parallel
Strand 4
A
244 246anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
320 321first strand
Strand 2
A
324 325anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
172 175first strand
Strand 2
B
216 222parallel
Strand 3
B
232 238anti-parallel
Strand 4
B
275 276anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
191 195first strand
Strand 2
B
198 209anti-parallel
Strand 3
B
260 271anti-parallel
Strand 4
B
244 246anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
320 321first strand
Strand 2
B
324 325anti-parallel
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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
172 175first strand
Strand 2
C
216 222parallel
Strand 3
C
232 238anti-parallel
Strand 4
C
275 276anti-parallel
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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
191 195first strand
Strand 2
C
198 209anti-parallel
Strand 3
C
260 271anti-parallel
Strand 4
C
244 246anti-parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
320 321first strand
Strand 2
C
324 325anti-parallel
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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
172 175first strand
Strand 2
D
216 222parallel
Strand 3
D
232 238anti-parallel
Strand 4
D
275 276anti-parallel
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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
191 195first strand
Strand 2
D
198 209anti-parallel
Strand 3
D
260 271anti-parallel
Strand 4
D
244 246anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
320 321first strand
Strand 2
D
324 325anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il