Analysis of interatomic Contacts of Structural Units in PDB entry:
2JIX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JIX entry

There are 9 chains in PDB entry 2JIX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASP 1CYS 214
B
ASP 8LEU 224
C
LYS 10LEU 224
D
GLN 1LYS 217
E
ASP 8LEU 224
F
GLN 1LYS 217
G
ASP 1CYS 214
H
GLN 1LYS 217
L
ASP 1CYS 214
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 2JIX. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
183 189Right-handed alpha
Helix 2
2
B
10 20Right-handed alpha
Helix 3
3
B
114 118Right-handed 310
Helix 4
4
B
150 152Right-handed 310
Helix 5
5
B
162 167Right-handed alpha
Helix 6
6
C
10 20Right-handed alpha
Helix 7
7
C
49 53Right-handed 310
Helix 8
8
C
114 118Right-handed 310
Helix 9
9
C
150 152Right-handed 310
Helix 10
10
D
28 31Right-handed 310
Helix 11
11
D
60 65Right-handed alpha
Helix 12
12
D
86 90Right-handed 310
Helix 13
13
D
158 161Right-handed 310
Helix 14
14
D
189 193Right-handed 310
Helix 15
15
D
204 207Right-handed 310
Helix 16
16
E
10 20Right-handed alpha
Helix 17
17
E
114 118Right-handed 310
Helix 18
18
E
150 152Right-handed 310
Helix 19
19
G
79 83Right-handed 310
Helix 20
20
G
121 126Right-handed alpha
Helix 21
21
G
184 189Right-handed alpha
Helix 22
22
H
28 31Right-handed 310
Helix 23
23
H
63 67Right-handed 310
Helix 24
24
H
130 134Right-handed 310
Helix 25
25
L
79 83Right-handed 310
Helix 26
26
L
183 188Right-handed alpha
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There are 42 sheets in PDB entry 2JIX. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE, CA, CB, CC, CD, A, DB, C, DD, DE, EA, EB, EC, FA, FB, FC, FD, FE, FF, GA, GB, GC, GD, GE, HA, HB, HC, HD, HE, LA, LB, LC, LD,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
4 7first strand
Strand 2
A
19 25anti-parallel
Strand 3
A
70 75anti-parallel
Strand 4
A
62 67anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
10 14first strand
Strand 2
A
103 107parallel
Strand 3
A
84 90anti-parallel
Strand 4
A
33 38anti-parallel
Strand 5
A
45 49anti-parallel
Strand 6
A
53 54anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
114 118first strand
Strand 2
A
133 137anti-parallel
Strand 3
A
175 179anti-parallel
Strand 4
A
159 163anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
129 130first strand
Strand 2
A
181 182anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
146 150first strand
Strand 2
A
192 196anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
27 30first strand
Strand 2
B
36 42anti-parallel
Strand 3
B
79 84anti-parallel
Strand 4
B
70 73anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
53 58first strand
Strand 2
B
96 102anti-parallel
Strand 3
B
106 113anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
119 120first strand
Strand 2
B
207 208parallel
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There are 7 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
180 183first strand
Strand 2
B
137 143anti-parallel
Strand 3
B
125 132anti-parallel
Strand 4
C
170 174anti-parallel
Strand 5
C
154 161anti-parallel
Strand 6
C
191 200anti-parallel
Strand 7
C
216 219anti-parallel
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There are 4 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
171 174first strand
Strand 2
B
154 161anti-parallel
Strand 3
B
191 200anti-parallel
Strand 4
B
216 219anti-parallel
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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
29 30first strand
Strand 2
C
36 41anti-parallel
Strand 3
C
78 84anti-parallel
Strand 4
C
70 74anti-parallel
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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
54 58first strand
Strand 2
C
97 101anti-parallel
Strand 3
C
107 112anti-parallel
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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
119 120first strand
Strand 2
C
207 208parallel
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There are 7 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
180 183first strand
Strand 2
C
138 143anti-parallel
Strand 3
C
125 131anti-parallel
Strand 4
E
170 174anti-parallel
Strand 5
E
154 162anti-parallel
Strand 6
E
191 200anti-parallel
Strand 7
E
216 219anti-parallel
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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
3 7first strand
Strand 2
D
18 25anti-parallel
Strand 3
D
77 82anti-parallel
Strand 4
D
67 72anti-parallel
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There are 6 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
11 12first strand
Strand 2
D
110 114parallel
Strand 3
D
91 98anti-parallel
Strand 4
D
33 39anti-parallel
Strand 5
D
46 52anti-parallel
Strand 6
D
58 59anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
11 12first strand
Strand 2
D
110 114parallel
Strand 3
D
91 98anti-parallel
Strand 4
D
105 106anti-parallel
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There are 4 strands in DD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
123 124first strand
Strand 2
D
141 148anti-parallel
Strand 3
D
179 185anti-parallel
Strand 4
D
172 173anti-parallel
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There are 2 strands in DE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
198 200first strand
Strand 2
D
211 213anti-parallel
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There are 4 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
27 29first strand
Strand 2
E
37 42anti-parallel
Strand 3
E
79 84anti-parallel
Strand 4
E
70 73anti-parallel
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There are 4 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
65 67first strand
Strand 2
E
54 58anti-parallel
Strand 3
E
96 101anti-parallel
Strand 4
E
107 113anti-parallel
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There are 3 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
125 131first strand
Strand 2
E
138 143anti-parallel
Strand 3
E
180 183anti-parallel
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There are 4 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
3 6first strand
Strand 2
F
21 25anti-parallel
Strand 3
F
77 81anti-parallel
Strand 4
F
68 69anti-parallel
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There are 6 strands in FB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
10 12first strand
Strand 2
F
110 114parallel
Strand 3
F
91 96anti-parallel
Strand 4
F
33 39anti-parallel
Strand 5
F
46 52anti-parallel
Strand 6
F
57 59anti-parallel
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There are 2 strands in FC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
146 148first strand
Strand 2
F
179 180anti-parallel
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There are 2 strands in FD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
154 155first strand
Strand 2
F
201 202anti-parallel
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There are 2 strands in FE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
167 168first strand
Strand 2
F
183 184anti-parallel
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There are 2 strands in FF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
197 198first strand
Strand 2
F
213 214anti-parallel
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There are 4 strands in GA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
4 7first strand
Strand 2
G
19 25anti-parallel
Strand 3
G
70 75anti-parallel
Strand 4
G
62 67anti-parallel
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There are 6 strands in GB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
10 14first strand
Strand 2
G
102 107parallel
Strand 3
G
84 90anti-parallel
Strand 4
G
33 38anti-parallel
Strand 5
G
45 49anti-parallel
Strand 6
G
53 54anti-parallel
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There are 4 strands in GC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
10 14first strand
Strand 2
G
102 107parallel
Strand 3
G
84 90anti-parallel
Strand 4
G
97 98anti-parallel
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There are 3 strands in GD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
114 118first strand
Strand 2
G
130 137anti-parallel
Strand 3
G
175 181anti-parallel
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There are 4 strands in GE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
153 154first strand
Strand 2
G
144 150anti-parallel
Strand 3
G
192 198anti-parallel
Strand 4
G
205 209anti-parallel
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There are 4 strands in HA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
3 7first strand
Strand 2
H
17 25anti-parallel
Strand 3
H
77 83anti-parallel
Strand 4
H
69 72anti-parallel
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There are 5 strands in HB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
57 59first strand
Strand 2
H
46 52anti-parallel
Strand 3
H
33 39anti-parallel
Strand 4
H
91 98anti-parallel
Strand 5
H
110 112anti-parallel
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There are 4 strands in HC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
123 126first strand
Strand 2
H
141 148anti-parallel
Strand 3
H
179 185anti-parallel
Strand 4
H
166 168anti-parallel
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There are 4 strands in HD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
123 126first strand
Strand 2
H
141 148anti-parallel
Strand 3
H
179 185anti-parallel
Strand 4
H
172 173anti-parallel
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There are 3 strands in HE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
154 157first strand
Strand 2
H
199 202anti-parallel
Strand 3
H
209 210anti-parallel
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There are 4 strands in LA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 25anti-parallel
Strand 3
L
70 75anti-parallel
Strand 4
L
62 67anti-parallel
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There are 6 strands in LB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
10 14first strand
Strand 2
L
102 107parallel
Strand 3
L
84 90anti-parallel
Strand 4
L
33 38anti-parallel
Strand 5
L
45 49anti-parallel
Strand 6
L
53 54anti-parallel
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There are 4 strands in LC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
114 118first strand
Strand 2
L
129 139anti-parallel
Strand 3
L
173 182anti-parallel
Strand 4
L
159 163anti-parallel
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There are 3 strands in LD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
145 150first strand
Strand 2
L
191 197anti-parallel
Strand 3
L
206 210anti-parallel
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