Analysis of interatomic Contacts of Structural Units in PDB entry:
2JJD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JJD entry

There are 6 chains in PDB entry 2JJD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
TYR 112ASP 691
B
LYS 111ASP 691
C
LYS 111ASP 691
D
TYR 112ASP 691
E
LYS 111ASP 691
F
LYS 111ASP 691
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are114 helices in PDB entry 2JJD. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
119 127Right-handed alpha
Helix 2
2
A
138 142Right-handed 310
Helix 3
3
A
156 163Right-handed 310
Helix 4
4
A
211 213Right-handed 310
Helix 5
5
A
214 225Right-handed alpha
Helix 6
6
A
310 324Right-handed alpha
Helix 7
7
A
340 359Right-handed alpha
Helix 8
8
A
362 372Right-handed alpha
Helix 9
9
A
380 397Right-handed alpha
Helix 10
10
A
425 435Right-handed alpha
Helix 11
11
A
443 448Right-handed alpha
Helix 12
12
A
448 453Right-handed alpha
Helix 13
13
A
506 517Right-handed alpha
Helix 14
14
A
604 621Right-handed alpha
Helix 15
15
A
635 654Right-handed alpha
Helix 16
16
A
657 667Right-handed alpha
Helix 17
17
A
675 691Right-handed alpha
Helix 18
18
B
119 127Right-handed alpha
Helix 19
19
B
133 140Right-handed alpha
Helix 20
20
B
152 156Right-handed 310
Helix 21
21
B
156 163Right-handed 310
Helix 22
22
B
211 213Right-handed 310
Helix 23
23
B
214 225Right-handed alpha
Helix 24
24
B
310 324Right-handed alpha
Helix 25
25
B
340 359Right-handed alpha
Helix 26
26
B
362 372Right-handed alpha
Helix 27
27
B
380 397Right-handed alpha
Helix 28
28
B
425 435Right-handed alpha
Helix 29
29
B
448 453Right-handed alpha
Helix 30
30
B
463 466Right-handed 310
Helix 31
31
B
503 505Right-handed 310
Helix 32
32
B
506 517Right-handed alpha
Helix 33
33
B
604 621Right-handed alpha
Helix 34
34
B
635 654Right-handed alpha
Helix 35
35
B
657 667Right-handed alpha
Helix 36
36
B
675 691Right-handed alpha
Helix 37
37
C
119 127Right-handed alpha
Helix 38
38
C
134 140Right-handed alpha
Helix 39
39
C
156 163Right-handed 310
Helix 40
40
C
211 213Right-handed 310
Helix 41
41
C
214 225Right-handed alpha
Helix 42
42
C
310 324Right-handed alpha
Helix 43
43
C
340 359Right-handed alpha
Helix 44
44
C
362 372Right-handed alpha
Helix 45
45
C
380 397Right-handed alpha
Helix 46
46
C
425 434Right-handed alpha
Helix 47
47
C
439 442Right-handed 310
Helix 48
48
C
443 448Right-handed alpha
Helix 49
49
C
448 453Right-handed alpha
Helix 50
50
C
463 465Right-handed 310
Helix 51
51
C
506 517Right-handed alpha
Helix 52
52
C
604 622Right-handed alpha
Helix 53
53
C
635 654Right-handed alpha
Helix 54
54
C
657 669Right-handed alpha
Helix 55
55
C
675 691Right-handed alpha
Helix 56
56
D
119 127Right-handed alpha
Helix 57
57
D
134 140Right-handed alpha
Helix 58
58
D
156 163Right-handed 310
Helix 59
59
D
211 213Right-handed 310
Helix 60
60
D
214 225Right-handed alpha
Helix 61
61
D
310 324Right-handed alpha
Helix 62
62
D
340 359Right-handed alpha
Helix 63
63
D
362 372Right-handed alpha
Helix 64
64
D
380 397Right-handed alpha
Helix 65
65
D
425 434Right-handed alpha
Helix 66
66
D
439 442Right-handed 310
Helix 67
67
D
443 448Right-handed alpha
Helix 68
68
D
448 453Right-handed alpha
Helix 69
69
D
463 466Right-handed 310
Helix 70
70
D
506 517Right-handed alpha
Helix 71
71
D
604 622Right-handed alpha
Helix 72
72
D
635 654Right-handed alpha
Helix 73
73
D
657 669Right-handed alpha
Helix 74
74
D
675 690Right-handed alpha
Helix 75
75
E
119 127Right-handed alpha
Helix 76
76
E
132 140Right-handed alpha
Helix 77
77
E
152 156Right-handed 310
Helix 78
78
E
156 163Right-handed 310
Helix 79
79
E
211 213Right-handed 310
Helix 80
80
E
214 225Right-handed alpha
Helix 81
81
E
310 324Right-handed alpha
Helix 82
82
E
340 359Right-handed alpha
Helix 83
83
E
362 372Right-handed alpha
Helix 84
84
E
380 397Right-handed alpha
Helix 85
85
E
425 436Right-handed alpha
Helix 86
86
E
439 442Right-handed 310
Helix 87
87
E
443 448Right-handed alpha
Helix 88
88
E
448 453Right-handed alpha
Helix 89
89
E
503 505Right-handed 310
Helix 90
90
E
506 517Right-handed alpha
Helix 91
91
E
604 621Right-handed alpha
Helix 92
92
E
635 654Right-handed alpha
Helix 93
93
E
657 667Right-handed alpha
Helix 94
94
E
675 690Right-handed alpha
Helix 95
95
F
119 127Right-handed alpha
Helix 96
96
F
132 140Right-handed alpha
Helix 97
97
F
152 156Right-handed 310
Helix 98
98
F
156 163Right-handed 310
Helix 99
99
F
211 213Right-handed 310
Helix 100
100
F
214 225Right-handed alpha
Helix 101
101
F
310 324Right-handed alpha
Helix 102
102
F
340 359Right-handed alpha
Helix 103
103
F
362 372Right-handed alpha
Helix 104
104
F
380 397Right-handed alpha
Helix 105
105
F
425 435Right-handed alpha
Helix 106
106
F
439 442Right-handed 310
Helix 107
107
F
443 448Right-handed alpha
Helix 108
108
F
448 453Right-handed alpha
Helix 109
109
F
503 505Right-handed 310
Helix 110
110
F
506 517Right-handed alpha
Helix 111
111
F
604 621Right-handed alpha
Helix 112
112
F
635 654Right-handed alpha
Helix 113
113
F
657 667Right-handed alpha
Helix 114
114
F
675 691Right-handed alpha
Back to top of page

There are 34 sheets in PDB entry 2JJD. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, BA, BB, BC, BD, BE, BF, CA, CB, CC, CD, CE, A, DB, C, DD, DE, DF, EA, EB, EC, ED, EE, EF, FA, FB, FC, FD, FE,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
115 116first strand
Strand 2
A
360 361anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
175 177first strand
Strand 2
A
189 197anti-parallel
Strand 3
A
200 207anti-parallel
Strand 4
A
331 334parallel
Strand 5
A
229 232parallel
Strand 6
A
291 298parallel
Strand 7
A
272 279anti-parallel
Strand 8
A
259 268anti-parallel
Strand 9
A
253 256anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
237 238first strand
Strand 2
A
241 242anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
402 403first strand
Strand 2
A
655 656anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
467 469first strand
Strand 2
A
481 487anti-parallel
Strand 3
A
496 499anti-parallel
Strand 4
A
626 629parallel
Strand 5
A
521 524parallel
Strand 6
A
584 592parallel
Strand 7
A
564 573anti-parallel
Strand 8
A
551 560anti-parallel
Strand 9
A
545 548anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
529 530first strand
Strand 2
A
533 534anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
115 116first strand
Strand 2
B
360 361anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
175 177first strand
Strand 2
B
189 197anti-parallel
Strand 3
B
200 207anti-parallel
Strand 4
B
331 334parallel
Strand 5
B
229 232parallel
Strand 6
B
291 298parallel
Strand 7
B
272 279anti-parallel
Strand 8
B
259 268anti-parallel
Strand 9
B
253 256anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
237 238first strand
Strand 2
B
241 242anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
402 403first strand
Strand 2
B
655 656anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
484 487first strand
Strand 2
B
496 499anti-parallel
Strand 3
B
626 629parallel
Strand 4
B
521 524parallel
Strand 5
B
584 592parallel
Strand 6
B
564 573anti-parallel
Strand 7
B
551 560anti-parallel
Strand 8
B
545 548anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
529 530first strand
Strand 2
B
533 534anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
115 116first strand
Strand 2
C
360 361anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
175 177first strand
Strand 2
C
189 197anti-parallel
Strand 3
C
200 207anti-parallel
Strand 4
C
331 334parallel
Strand 5
C
229 232parallel
Strand 6
C
291 298parallel
Strand 7
C
272 279anti-parallel
Strand 8
C
259 268anti-parallel
Strand 9
C
253 256anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
402 403first strand
Strand 2
C
655 656anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
467 469first strand
Strand 2
C
481 487anti-parallel
Strand 3
C
496 499anti-parallel
Strand 4
C
626 629parallel
Strand 5
C
521 524parallel
Strand 6
C
584 592parallel
Strand 7
C
564 573anti-parallel
Strand 8
C
551 559anti-parallel
Strand 9
C
545 546anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in CE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
529 530first strand
Strand 2
C
533 534anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
115 116first strand
Strand 2
D
360 361anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
175 177first strand
Strand 2
D
189 197anti-parallel
Strand 3
D
200 207anti-parallel
Strand 4
D
331 334parallel
Strand 5
D
229 232parallel
Strand 6
D
291 298parallel
Strand 7
D
272 279anti-parallel
Strand 8
D
259 268anti-parallel
Strand 9
D
253 256anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
237 238first strand
Strand 2
D
241 242anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
402 403first strand
Strand 2
D
655 656anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in DE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
484 487first strand
Strand 2
D
496 499anti-parallel
Strand 3
D
626 629parallel
Strand 4
D
521 524parallel
Strand 5
D
584 592parallel
Strand 6
D
564 573anti-parallel
Strand 7
D
551 559anti-parallel
Strand 8
D
545 548anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in DF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
529 530first strand
Strand 2
D
533 534anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
115 116first strand
Strand 2
E
360 361anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
175 177first strand
Strand 2
E
189 197anti-parallel
Strand 3
E
200 207anti-parallel
Strand 4
E
331 334parallel
Strand 5
E
229 232parallel
Strand 6
E
291 298parallel
Strand 7
E
272 279anti-parallel
Strand 8
E
259 268anti-parallel
Strand 9
E
253 256anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
237 238first strand
Strand 2
E
241 242anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in ED sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
402 403first strand
Strand 2
E
655 656anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in EE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
484 487first strand
Strand 2
E
496 499anti-parallel
Strand 3
E
626 629parallel
Strand 4
E
521 524parallel
Strand 5
E
584 592parallel
Strand 6
E
564 573anti-parallel
Strand 7
E
551 560anti-parallel
Strand 8
E
545 548anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in EF sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
529 530first strand
Strand 2
E
533 534anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
115 116first strand
Strand 2
F
360 361anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in FB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
175 177first strand
Strand 2
F
189 197anti-parallel
Strand 3
F
200 207anti-parallel
Strand 4
F
331 334parallel
Strand 5
F
229 232parallel
Strand 6
F
291 298parallel
Strand 7
F
272 279anti-parallel
Strand 8
F
259 268anti-parallel
Strand 9
F
253 256anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in FC sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
237 238first strand
Strand 2
F
241 242anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in FD sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
402 403first strand
Strand 2
F
655 656anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in FE sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
484 487first strand
Strand 2
F
496 499anti-parallel
Strand 3
F
626 629parallel
Strand 4
F
521 524parallel
Strand 5
F
584 591parallel
Strand 6
F
565 573anti-parallel
Strand 7
F
551 559anti-parallel
Strand 8
F
545 546anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il