Analysis of interatomic Contacts of Structural Units in PDB entry:
2KII


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2KII entry

There is 1 chain in PDB entry 2KII (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 181
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 2KII. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 17Right-handed alpha
Helix 2
2
A
18 30Right-handed alpha
Helix 3
3
A
45 58Right-handed alpha
Helix 4
4
A
61 86Right-handed alpha
Helix 5
5
A
87 89Right-handed 310
Helix 6
6
A
90 96Right-handed alpha
Helix 7
7
A
101 110Right-handed alpha
Helix 8
8
A
138 153Right-handed alpha
Helix 9
9
A
164 168Right-handed 310
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There is 1 sheet ( A) in PDB entry 2KII.

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 122first strand
Strand 2
A
127 133anti-parallel
Strand 3
A
172 178anti-parallel
Strand 4
A
157 163anti-parallel
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