Analysis of interatomic Contacts of Structural Units in PDB entry:
2L29


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2L29 entry

There are 2 chains in PDB entry 2L29 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1508GLU 1649
B
ALA 1GLU 67
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 2L29. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
1643 1646Right-handed 310
Helix 2
2
B
10 22Right-handed alpha
Helix 3
3
B
44 49Right-handed alpha
Helix 4
4
B
52 60Right-handed alpha
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There are 4 sheets in PDB entry 2L29. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1517 1519first strand
Strand 2
A
1526 1528anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1538 1541first strand
Strand 2
A
1547 1550anti-parallel
Strand 3
A
1563 1567anti-parallel
Strand 4
A
1572 1576anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1580 1584first strand
Strand 2
A
1587 1592anti-parallel
Strand 3
A
1607 1614anti-parallel
Strand 4
A
1635 1642parallel
Strand 5
A
1625 1630anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1597 1598first strand
Strand 2
A
1604 1605anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il