Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 2LUE entry
Note, this PDB entry contains
modified residue(s) PHOSPHOSERINE (SEP) . This residue is
treated as heterogroup (ligand) both in the
PDB entry and in LPC/CSU analysis.
There are 5 chains in PDB entry 2LUE
(CSU analysis of residue contacts immediately below table)
Chain ID |
Initial residue | Terminal residue |
A
|
GLY 1 | PHE 119 |
B
|
ASN 169 | ASN 169 |
B
|
GLY 172 | GLY 172 |
B
|
GLU 175 | ASP 176 |
B
|
PHE 178 | GLU 185 |
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There are 4
helices in PDB entry 2LUE. Click on helix of interest for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
Helix 1 |
1 | A
| 6 |
11 | Right-handed alpha |
Helix 2 |
2 | A
| 12 |
27 | Right-handed alpha |
Helix 3 |
3 | A
| 59 |
72 | Right-handed alpha |
Helix 4 |
4 | A
| 94 |
103 | Right-handed alpha |
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There is
1 sheet ( A) in PDB entry 2LUE.
There are 5
strands in A sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
A
| 80 |
83 | first strand |
Strand 2 |
A
| 109 |
114 | anti-parallel |
Strand 3 |
A
| 30 |
37 | parallel |
Strand 4 |
A
| 51 |
55 | anti-parallel |
Strand 5 |
B
| 178 |
180 | parallel |
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Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il