Analysis of interatomic Contacts of Structural Units in PDB entry:
2LVM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2LVM entry

There are 3 chains in PDB entry 2LVM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -3GLY 1603
B
 GLY 14ARG 19
B
 VAL 21GLN 27
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There is 1 helix in PDB entry 2LVM. Click on helix number for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1589 1601Right-handed alpha
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There are 3 sheets in PDB entry 2LVM. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1524 1528first strand
Strand 2
A
1514 1519anti-parallel
Strand 3
A
1501 1511anti-parallel
Strand 4
A
1490 1494anti-parallel
Strand 5
A
1532 1533anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1562 1564first strand
Strand 2
A
1567 1574anti-parallel
Strand 3
A
1577 1582anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1562 1564first strand
Strand 2
A
1567 1574anti-parallel
Strand 3
A
1553 1558anti-parallel
Strand 4
A
1543 1547anti-parallel
Strand 5
A
1586 1587anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il