Analysis of interatomic Contacts of Structural Units in PDB entry:
2MKJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2MKJ entry

There is 1 chain in PDB entry 2MKJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 53VAL 254
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 2MKJ. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
77 85Right-handed alpha
Helix 2
2
A
119 127Right-handed alpha
Helix 3
3
A
186 197Right-handed alpha
Helix 4
4
A
225 233Right-handed alpha
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There are 3 sheets in PDB entry 2MKJ. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
91 94first strand
Strand 2
A
111 115anti-parallel
Strand 3
A
64 69anti-parallel
Strand 4
A
149 154anti-parallel
Strand 5
A
135 137anti-parallel
Strand 6
A
129 130anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
160 162first strand
Strand 2
A
202 208anti-parallel
Strand 3
A
213 221anti-parallel
Strand 4
A
174 178anti-parallel
Strand 5
A
249 252anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
238 241first strand
Strand 2
A
244 246anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il