Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 2MPM entry
There are 3 chains in PDB entry 2MPM
(CSU analysis of residue contacts immediately below table)
Chain ID |
Initial residue | Terminal residue |
A
|
GLY 1 | PRO 74 |
B
|
VAL 208 | SER 215 |
B
|
ASP 218 | LEU 223 |
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There is 1
helix in PDB entry 2MPM. Click on helix number for
CSU analysis.
Helix number
| Helix ID | Chain ID |
Initial residue | Terminal residue |
Helix class |
Helix 1 |
1 | A
| 55 |
67 | Right-handed alpha |
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There is
1 sheet ( A) in PDB entry 2MPM.
There are 3
strands in A sheet. Click on strand of interest
for CSU analysis.
Strand number
| Chain ID |
Initial residue | Terminal residue |
Strand sense |
Strand 1 |
A
| 25 |
29 | first strand |
Strand 2 |
A
| 38 |
42 | anti-parallel |
Strand 3 |
A
| 48 |
49 | anti-parallel |
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Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il