Analysis of interatomic Contacts of Structural Units in PDB entry:
2MPR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2MPR entry

There are 3 chains in PDB entry 2MPR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
VAL 1TRP 427
B
VAL 1TRP 427
C
VAL 1TRP 427
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 2MPR. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
93 95Right-handed 310
Helix 2
2
A
113 115Right-handed 310
Helix 3
3
A
237 239Right-handed 310
Helix 4
4
B
93 95Right-handed 310
Helix 5
5
B
113 115Right-handed 310
Helix 6
6
B
237 239Right-handed 310
Helix 7
7
C
93 95Right-handed 310
Helix 8
8
C
113 115Right-handed 310
Helix 9
9
C
237 239Right-handed 310
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There are 18 sheets in PDB entry 2MPR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 19 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
41 47first strand
Strand 2
A
2 14anti-parallel
Strand 3
A
413 426anti-parallel
Strand 4
A
372 384anti-parallel
Strand 5
A
349 362anti-parallel
Strand 6
A
330 343anti-parallel
Strand 7
A
313 325anti-parallel
Strand 8
A
294 307anti-parallel
Strand 9
A
277 290anti-parallel
Strand 10
A
226 236anti-parallel
Strand 11
A
211 223anti-parallel
Strand 12
A
185 197anti-parallel
Strand 13
A
164 177anti-parallel
Strand 14
A
138 153anti-parallel
Strand 15
A
124 130anti-parallel
Strand 16
A
99 105anti-parallel
Strand 17
A
80 89anti-parallel
Strand 18
A
57 68anti-parallel
Strand 19
A
40 44anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
255 257first strand
Strand 2
A
267 269anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
386 388first strand
Strand 2
A
399 401anti-parallel
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There are 19 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
41 47first strand
Strand 2
B
2 14anti-parallel
Strand 3
B
413 426anti-parallel
Strand 4
B
372 384anti-parallel
Strand 5
B
349 362anti-parallel
Strand 6
B
330 343anti-parallel
Strand 7
B
313 327anti-parallel
Strand 8
B
294 307anti-parallel
Strand 9
B
277 290anti-parallel
Strand 10
B
226 236anti-parallel
Strand 11
B
211 223anti-parallel
Strand 12
B
185 197anti-parallel
Strand 13
B
164 177anti-parallel
Strand 14
B
138 153anti-parallel
Strand 15
B
124 130anti-parallel
Strand 16
B
99 105anti-parallel
Strand 17
B
80 89anti-parallel
Strand 18
B
57 68anti-parallel
Strand 19
B
40 44anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
255 257first strand
Strand 2
B
267 269anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
386 388first strand
Strand 2
B
399 401anti-parallel
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There are 19 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
41 47first strand
Strand 2
C
2 14anti-parallel
Strand 3
C
413 426anti-parallel
Strand 4
C
372 384anti-parallel
Strand 5
C
349 362anti-parallel
Strand 6
C
330 343anti-parallel
Strand 7
C
313 325anti-parallel
Strand 8
C
294 307anti-parallel
Strand 9
C
277 290anti-parallel
Strand 10
C
226 236anti-parallel
Strand 11
C
211 223anti-parallel
Strand 12
C
185 197anti-parallel
Strand 13
C
164 177anti-parallel
Strand 14
C
138 153anti-parallel
Strand 15
C
124 130anti-parallel
Strand 16
C
99 105anti-parallel
Strand 17
C
80 89anti-parallel
Strand 18
C
57 68anti-parallel
Strand 19
C
40 44anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
255 257first strand
Strand 2
C
267 269anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
386 388first strand
Strand 2
C
399 401anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
48 53first strand
Strand 2
A
56 60anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
110 112first strand
Strand 2
A
117 120anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
179 182first strand
Strand 2
A
185 187anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
48 53first strand
Strand 2
B
56 60anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
110 112first strand
Strand 2
B
117 120anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
179 182first strand
Strand 2
B
185 187anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
48 53first strand
Strand 2
C
56 60anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
110 112first strand
Strand 2
C
117 120anti-parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
179 182first strand
Strand 2
C
185 187anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il