Analysis of interatomic Contacts of Structural Units in PDB entry:
2NRY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2NRY entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 8 chains in PDB entry 2NRY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 164MET 344
A
 SER 346THR 458
B
 ARG 164MET 344
B
 SER 346THR 458
C
 ARG 164MET 344
C
 SER 346THR 458
D
 ARG 164MET 344
D
 SER 346SER 460
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 2NRY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
169 177Right-handed alpha
Helix 2
2
A
184 188Right-handed 310
Helix 3
3
A
224 240Right-handed alpha
Helix 4
4
A
269 276Right-handed alpha
Helix 5
5
A
277 280Right-handed 310
Helix 6
6
A
284 305Right-handed alpha
Helix 7
7
A
313 315Right-handed 310
Helix 8
8
A
351 355Right-handed 310
Helix 9
9
A
356 361Right-handed alpha
Helix 10
10
A
365 383Right-handed alpha
Helix 11
11
A
395 406Right-handed alpha
Helix 12
12
A
409 413Right-handed 310
Helix 13
13
A
422 437Right-handed alpha
Helix 14
14
A
440 444Right-handed 310
Helix 15
15
A
446 458Right-handed alpha
Helix 16
16
B
169 177Right-handed alpha
Helix 17
17
B
184 188Right-handed 310
Helix 18
18
B
222 240Right-handed alpha
Helix 19
19
B
270 275Right-handed alpha
Helix 20
20
B
276 280Right-handed 310
Helix 21
21
B
284 305Right-handed alpha
Helix 22
22
B
313 315Right-handed 310
Helix 23
23
B
351 355Right-handed 310
Helix 24
24
B
356 361Right-handed alpha
Helix 25
25
B
366 383Right-handed alpha
Helix 26
26
B
396 405Right-handed alpha
Helix 27
27
B
422 437Right-handed alpha
Helix 28
28
B
440 444Right-handed 310
Helix 29
29
B
446 458Right-handed alpha
Helix 30
30
C
169 177Right-handed alpha
Helix 31
31
C
226 240Right-handed alpha
Helix 32
32
C
269 275Right-handed alpha
Helix 33
33
C
276 280Right-handed 310
Helix 34
34
C
284 305Right-handed alpha
Helix 35
35
C
313 315Right-handed 310
Helix 36
36
C
351 355Right-handed 310
Helix 37
37
C
356 361Right-handed alpha
Helix 38
38
C
366 383Right-handed alpha
Helix 39
39
C
395 405Right-handed alpha
Helix 40
40
C
409 413Right-handed 310
Helix 41
41
C
422 437Right-handed alpha
Helix 42
42
C
446 458Right-handed alpha
Helix 43
43
D
169 177Right-handed alpha
Helix 44
44
D
225 240Right-handed alpha
Helix 45
45
D
269 276Right-handed alpha
Helix 46
46
D
277 280Right-handed 310
Helix 47
47
D
284 305Right-handed alpha
Helix 48
48
D
313 315Right-handed 310
Helix 49
49
D
351 355Right-handed 310
Helix 50
50
D
356 361Right-handed alpha
Helix 51
51
D
366 383Right-handed alpha
Helix 52
52
D
395 405Right-handed alpha
Helix 53
53
D
409 413Right-handed 310
Helix 54
54
D
422 437Right-handed alpha
Helix 55
55
D
440 444Right-handed 310
Helix 56
56
D
446 459Right-handed alpha
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There are 11 sheets in PDB entry 2NRY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 168first strand
Strand 2
A
248 252parallel
Strand 3
A
259 263anti-parallel
Strand 4
A
208 215anti-parallel
Strand 5
A
198 205anti-parallel
Strand 6
A
191 195anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 319first strand
Strand 2
A
325 327anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 168first strand
Strand 2
B
248 252parallel
Strand 3
B
259 263anti-parallel
Strand 4
B
208 215anti-parallel
Strand 5
B
198 205anti-parallel
Strand 6
B
191 194anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
268 269first strand
Strand 2
B
317 319anti-parallel
Strand 3
B
325 327anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
307 308first strand
Strand 2
B
334 335anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
343 344first strand
Strand 2
B
363 364anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
166 167first strand
Strand 2
C
248 252parallel
Strand 3
C
259 263anti-parallel
Strand 4
C
209 214anti-parallel
Strand 5
C
198 204anti-parallel
Strand 6
C
191 195anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
317 319first strand
Strand 2
C
325 327anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
166 167first strand
Strand 2
D
248 252parallel
Strand 3
D
259 263anti-parallel
Strand 4
D
210 214anti-parallel
Strand 5
D
199 203anti-parallel
Strand 6
D
191 194anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
307 308first strand
Strand 2
D
334 335anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
317 319first strand
Strand 2
D
325 327anti-parallel
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