Analysis of interatomic Contacts of Structural Units in PDB entry:
2NVU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2NVU entry

There are 5 chains in PDB entry 2NVU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 5LEU 534
B
LYS 1002SER 2442
C
LYS 3LYS 183
I
MET 1GLY 76
J
MET 1GLY 76
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 73 helices in PDB entry 2NVU. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
8 13Right-handed alpha
Helix 2
2
A
13 30Right-handed alpha
Helix 3
3
A
39 51Right-handed alpha
Helix 4
4
A
66 72Right-handed alpha
Helix 5
5
A
77 81Right-handed 310
Helix 6
6
A
84 94Right-handed alpha
Helix 7
7
A
108 116Right-handed alpha
Helix 8
8
A
118 122Right-handed 310
Helix 9
9
A
132 146Right-handed alpha
Helix 10
10
A
189 198Right-handed alpha
Helix 11
11
A
205 211Right-handed alpha
Helix 12
12
A
213 226Right-handed alpha
Helix 13
13
A
236 249Right-handed alpha
Helix 14
14
A
262 276Right-handed alpha
Helix 15
15
A
282 290Right-handed alpha
Helix 16
16
A
291 296Right-handed alpha
Helix 17
17
A
302 317Right-handed alpha
Helix 18
18
A
335 359Right-handed alpha
Helix 19
19
A
361 369Right-handed alpha
Helix 20
20
A
376 386Right-handed alpha
Helix 21
21
A
387 390Right-handed 310
Helix 22
22
A
397 403Right-handed alpha
Helix 23
23
A
408 416Right-handed alpha
Helix 24
24
A
422 439Right-handed alpha
Helix 25
25
A
446 448Right-handed 310
Helix 26
26
A
449 468Right-handed alpha
Helix 27
27
A
475 486Right-handed alpha
Helix 28
28
A
490 511Right-handed alpha
Helix 29
29
B
1018 1033Right-handed alpha
Helix 30
30
B
1043 1054Right-handed alpha
Helix 31
31
B
1065 1075Right-handed alpha
Helix 32
32
B
1083 1088Right-handed alpha
Helix 33
33
B
1093 1098Right-handed alpha
Helix 34
34
B
1132 1142Right-handed alpha
Helix 35
35
B
1154 1164Right-handed alpha
Helix 36
36
B
1186 1202Right-handed alpha
Helix 37
37
B
1210 1219Right-handed alpha
Helix 38
38
B
1274 1283Right-handed alpha
Helix 39
39
B
1287 1296Right-handed alpha
Helix 40
40
B
1305 1310Right-handed alpha
Helix 41
41
B
1320 1328Right-handed alpha
Helix 42
42
B
1336 1353Right-handed alpha
Helix 43
43
B
1357 1370Right-handed alpha
Helix 44
44
B
2017 2026Right-handed alpha
Helix 45
45
B
2039 2048Right-handed alpha
Helix 46
46
B
2058 2069Right-handed alpha
Helix 47
47
B
2084 2090Right-handed 310
Helix 48
48
B
2095 2099Right-handed 310
Helix 49
49
B
2102 2115Right-handed alpha
Helix 50
50
B
2126 2130Right-handed 310
Helix 51
51
B
2131 2137Right-handed alpha
Helix 52
52
B
2147 2161Right-handed alpha
Helix 53
53
B
2171 2174Right-handed 310
Helix 54
54
B
2203 2207Right-handed 310
Helix 55
55
B
2214 2221Right-handed alpha
Helix 56
56
B
2224 2235Right-handed alpha
Helix 57
57
B
2235 2241Right-handed alpha
Helix 58
58
B
2253 2271Right-handed alpha
Helix 59
59
B
2277 2287Right-handed alpha
Helix 60
60
B
2292 2313Right-handed alpha
Helix 61
61
B
2360 2371Right-handed alpha
Helix 62
62
B
2397 2405Right-handed alpha
Helix 63
63
B
2406 2410Right-handed 310
Helix 64
64
C
28 40Right-handed alpha
Helix 65
65
C
68 72Right-handed 310
Helix 66
66
C
112 116Right-handed 310
Helix 67
67
C
124 138Right-handed alpha
Helix 68
68
C
146 156Right-handed alpha
Helix 69
69
C
156 170Right-handed alpha
Helix 70
70
I
22 35Right-handed alpha
Helix 71
71
I
37 41Right-handed 310
Helix 72
72
J
23 31Right-handed alpha
Helix 73
73
J
55 60Right-handed 310
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There are 13 sheets in PDB entry 2NVU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
101 105first strand
Strand 2
A
56 60parallel
Strand 3
A
32 36parallel
Strand 4
A
125 129parallel
Strand 5
A
150 156parallel
Strand 6
A
159 165anti-parallel
Strand 7
A
519 523anti-parallel
Strand 8
A
528 532anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
169 171first strand
Strand 2
A
391 393anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1036 1039first strand
Strand 2
B
1008 1011parallel
Strand 3
B
1060 1064parallel
Strand 4
B
1260 1267anti-parallel
Strand 5
B
1106 1113anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1099 1100first strand
Strand 2
B
1103 1104anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1115 1118first strand
Strand 2
B
1223 1228anti-parallel
Strand 3
B
1146 1148parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1168 1172first strand
Strand 2
B
1177 1183anti-parallel
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There are 8 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2119 2124first strand
Strand 2
B
2074 2079parallel
Strand 3
B
2051 2054parallel
Strand 4
B
2140 2143parallel
Strand 5
B
2177 2183parallel
Strand 6
B
2186 2192anti-parallel
Strand 7
B
2321 2325anti-parallel
Strand 8
B
2331 2335anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2164 2165first strand
Strand 2
B
2168 2169anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2351 2355first strand
Strand 2
B
2434 2440parallel
Strand 3
B
2422 2426anti-parallel
Strand 4
B
2380 2385anti-parallel
Strand 5
B
2388 2393anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
47 50first strand
Strand 2
C
59 64anti-parallel
Strand 3
C
76 81anti-parallel
Strand 4
C
92 95anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
171 173first strand
Strand 2
C
176 178anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
12 16first strand
Strand 2
I
2 6anti-parallel
Strand 3
I
66 69parallel
Strand 4
I
43 45anti-parallel
Strand 5
I
48 49anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
11 14first strand
Strand 2
J
3 7anti-parallel
Strand 3
J
65 70parallel
Strand 4
J
42 44anti-parallel
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