Analysis of interatomic Contacts of Structural Units in PDB entry:
2NZ8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2NZ8 entry

There are 2 chains in PDB entry 2NZ8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 177
B
 ALA 1231THR 1535
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 2NZ8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 14Right-handed 310
Helix 2
2
A
15 25Right-handed alpha
Helix 3
3
A
67 72Right-handed 310
Helix 4
4
A
86 96Right-handed alpha
Helix 5
5
A
96 105Right-handed alpha
Helix 6
6
A
116 120Right-handed 310
Helix 7
7
A
122 131Right-handed alpha
Helix 8
8
A
138 150Right-handed alpha
Helix 9
9
A
164 177Right-handed alpha
Helix 10
10
B
1231 1258Right-handed alpha
Helix 11
11
B
1258 1266Right-handed alpha
Helix 12
12
B
1277 1283Right-handed alpha
Helix 13
13
B
1284 1295Right-handed alpha
Helix 14
14
B
1295 1303Right-handed alpha
Helix 15
15
B
1306 1309Right-handed 310
Helix 16
16
B
1310 1317Right-handed alpha
Helix 17
17
B
1318 1321Right-handed 310
Helix 18
18
B
1322 1342Right-handed alpha
Helix 19
19
B
1344 1354Right-handed alpha
Helix 20
20
B
1358 1383Right-handed alpha
Helix 21
21
B
1390 1412Right-handed alpha
Helix 22
22
B
1516 1533Right-handed alpha
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There are 3 sheets in PDB entry 2NZ8. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 46first strand
Strand 2
A
49 56anti-parallel
Strand 3
A
3 10parallel
Strand 4
A
77 83parallel
Strand 5
A
110 115parallel
Strand 6
A
153 156parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1414 1415first strand
Strand 2
B
1470 1478parallel
Strand 3
B
1457 1464anti-parallel
Strand 4
B
1450 1453anti-parallel
Strand 5
B
1427 1431anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1495 1496first strand
Strand 2
B
1512 1513anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il