Analysis of interatomic Contacts of Structural Units in PDB entry:
2O2D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2O2D entry

There are 3 chains in PDB entry 2O2D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 39HIS 606
B
 ARG 38HIS 606
C
 ALA 46HIS 606
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are104 helices in PDB entry 2O2D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
53 67Right-handed alpha
Helix 2
2
A
70 78Right-handed alpha
Helix 3
3
A
80 85Right-handed alpha
Helix 4
4
A
109 123Right-handed alpha
Helix 5
5
A
124 134Right-handed alpha
Helix 6
6
A
147 152Right-handed alpha
Helix 7
7
A
166 186Right-handed alpha
Helix 8
8
A
205 208Right-handed 310
Helix 9
9
A
209 219Right-handed alpha
Helix 10
10
A
220 223Right-handed 310
Helix 11
11
A
236 247Right-handed alpha
Helix 12
12
A
248 250Right-handed 310
Helix 13
13
A
263 284Right-handed alpha
Helix 14
14
A
291 295Right-handed alpha
Helix 15
15
A
303 310Right-handed alpha
Helix 16
16
A
312 314Right-handed 310
Helix 17
17
A
324 328Right-handed 310
Helix 18
18
A
331 333Right-handed 310
Helix 19
19
A
334 342Right-handed alpha
Helix 20
20
A
342 363Right-handed alpha
Helix 21
21
A
364 367Right-handed 310
Helix 22
22
A
368 383Right-handed alpha
Helix 23
23
A
395 399Right-handed 310
Helix 24
24
A
400 414Right-handed alpha
Helix 25
25
A
438 443Right-handed 310
Helix 26
26
A
444 451Right-handed alpha
Helix 27
27
A
471 490Right-handed alpha
Helix 28
28
A
492 503Right-handed alpha
Helix 29
29
A
507 519Right-handed alpha
Helix 30
30
A
535 558Right-handed alpha
Helix 31
31
A
564 566Right-handed 310
Helix 32
32
A
567 578Right-handed alpha
Helix 33
33
A
579 581Right-handed 310
Helix 34
34
A
591 605Right-handed alpha
Helix 35
35
B
53 67Right-handed alpha
Helix 36
36
B
70 78Right-handed alpha
Helix 37
37
B
80 85Right-handed alpha
Helix 38
38
B
109 123Right-handed alpha
Helix 39
39
B
124 134Right-handed alpha
Helix 40
40
B
147 152Right-handed alpha
Helix 41
41
B
166 186Right-handed alpha
Helix 42
42
B
205 208Right-handed 310
Helix 43
43
B
209 219Right-handed alpha
Helix 44
44
B
220 223Right-handed 310
Helix 45
45
B
236 247Right-handed alpha
Helix 46
46
B
248 250Right-handed 310
Helix 47
47
B
263 284Right-handed alpha
Helix 48
48
B
291 295Right-handed alpha
Helix 49
49
B
302 310Right-handed alpha
Helix 50
50
B
312 314Right-handed 310
Helix 51
51
B
324 328Right-handed 310
Helix 52
52
B
331 333Right-handed 310
Helix 53
53
B
334 342Right-handed alpha
Helix 54
54
B
342 363Right-handed alpha
Helix 55
55
B
364 367Right-handed 310
Helix 56
56
B
368 383Right-handed alpha
Helix 57
57
B
395 399Right-handed 310
Helix 58
58
B
400 414Right-handed alpha
Helix 59
59
B
438 442Right-handed 310
Helix 60
60
B
444 451Right-handed alpha
Helix 61
61
B
471 490Right-handed alpha
Helix 62
62
B
492 502Right-handed alpha
Helix 63
63
B
507 515Right-handed alpha
Helix 64
64
B
516 519Right-handed 310
Helix 65
65
B
535 558Right-handed alpha
Helix 66
66
B
564 566Right-handed 310
Helix 67
67
B
567 578Right-handed alpha
Helix 68
68
B
579 581Right-handed 310
Helix 69
69
B
591 605Right-handed alpha
Helix 70
70
C
53 67Right-handed alpha
Helix 71
71
C
70 78Right-handed alpha
Helix 72
72
C
80 85Right-handed alpha
Helix 73
73
C
109 123Right-handed alpha
Helix 74
74
C
124 135Right-handed alpha
Helix 75
75
C
147 152Right-handed alpha
Helix 76
76
C
166 186Right-handed alpha
Helix 77
77
C
205 208Right-handed 310
Helix 78
78
C
209 219Right-handed alpha
Helix 79
79
C
220 223Right-handed 310
Helix 80
80
C
236 247Right-handed alpha
Helix 81
81
C
248 250Right-handed 310
Helix 82
82
C
263 284Right-handed alpha
Helix 83
83
C
291 295Right-handed alpha
Helix 84
84
C
302 310Right-handed alpha
Helix 85
85
C
312 314Right-handed 310
Helix 86
86
C
324 328Right-handed 310
Helix 87
87
C
331 333Right-handed 310
Helix 88
88
C
334 342Right-handed alpha
Helix 89
89
C
342 363Right-handed alpha
Helix 90
90
C
364 367Right-handed 310
Helix 91
91
C
368 383Right-handed alpha
Helix 92
92
C
395 399Right-handed 310
Helix 93
93
C
400 414Right-handed alpha
Helix 94
94
C
438 442Right-handed 310
Helix 95
95
C
444 451Right-handed alpha
Helix 96
96
C
471 490Right-handed alpha
Helix 97
97
C
492 501Right-handed alpha
Helix 98
98
C
509 515Right-handed alpha
Helix 99
99
C
516 519Right-handed 310
Helix 100
100
C
535 558Right-handed alpha
Helix 101
101
C
564 566Right-handed 310
Helix 102
102
C
567 578Right-handed alpha
Helix 103
103
C
579 581Right-handed 310
Helix 104
104
C
591 605Right-handed alpha
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There are 9 sheets in PDB entry 2O2D. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 90first strand
Strand 2
A
98 102anti-parallel
Strand 3
A
526 533anti-parallel
Strand 4
A
457 464parallel
Strand 5
A
388 394parallel
Strand 6
A
431 433parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
160 161first strand
Strand 2
A
164 165anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 232first strand
Strand 2
A
199 203parallel
Strand 3
A
252 257parallel
Strand 4
A
296 300parallel
Strand 5
A
316 318parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 90first strand
Strand 2
B
98 105anti-parallel
Strand 3
B
526 533anti-parallel
Strand 4
B
457 464parallel
Strand 5
B
388 394parallel
Strand 6
B
431 433parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 161first strand
Strand 2
B
164 165anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
228 232first strand
Strand 2
B
199 203parallel
Strand 3
B
252 257parallel
Strand 4
B
296 300parallel
Strand 5
B
316 318parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
86 90first strand
Strand 2
C
98 105anti-parallel
Strand 3
C
526 533anti-parallel
Strand 4
C
457 464parallel
Strand 5
C
388 394parallel
Strand 6
C
431 433parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
160 161first strand
Strand 2
C
164 165anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
228 232first strand
Strand 2
C
199 203parallel
Strand 3
C
252 257parallel
Strand 4
C
296 300parallel
Strand 5
C
316 318parallel
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