Analysis of interatomic Contacts of Structural Units in PDB entry:
2O8D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2O8D entry

There are 4 chains in PDB entry 2O8D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
G 1 G 15
F
C 16 C 30
A
MET 1GLN 855
B
PRO 362GLU 1335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 63 helices in PDB entry 2O8D. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
12 25Right-handed alpha
Helix 2
2
A
47 57Right-handed alpha
Helix 3
3
A
82 95Right-handed alpha
Helix 4
4
A
184 195Right-handed alpha
Helix 5
5
A
210 219Right-handed alpha
Helix 6
6
A
258 262Right-handed 310
Helix 7
7
A
263 277Right-handed alpha
Helix 8
8
A
303 311Right-handed alpha
Helix 9
9
A
325 331Right-handed alpha
Helix 10
10
A
335 348Right-handed alpha
Helix 11
11
A
352 370Right-handed alpha
Helix 12
12
A
370 378Right-handed alpha
Helix 13
13
A
380 384Right-handed 310
Helix 14
14
A
386 396Right-handed alpha
Helix 15
15
A
401 413Right-handed alpha
Helix 16
16
A
413 422Right-handed alpha
Helix 17
17
A
436 447Right-handed alpha
Helix 18
18
A
447 456Right-handed alpha
Helix 19
19
A
475 503Right-handed alpha
Helix 20
20
A
554 586Right-handed alpha
Helix 21
21
A
589 615Right-handed alpha
Helix 22
22
A
674 690Right-handed alpha
Helix 23
23
A
724 739Right-handed alpha
Helix 24
24
A
755 773Right-handed alpha
Helix 25
25
A
789 794Right-handed alpha
Helix 26
26
A
826 834Right-handed alpha
Helix 27
27
A
837 853Right-handed alpha
Helix 28
28
B
365 374Right-handed 310
Helix 29
29
B
399 404Right-handed alpha
Helix 30
30
B
407 420Right-handed alpha
Helix 31
31
B
437 448Right-handed alpha
Helix 32
32
B
465 476Right-handed alpha
Helix 33
33
B
488 498Right-handed alpha
Helix 34
34
B
504 508Right-handed 310
Helix 35
35
B
579 589Right-handed alpha
Helix 36
36
B
602 610Right-handed alpha
Helix 37
37
B
629 640Right-handed alpha
Helix 38
38
B
656 662Right-handed alpha
Helix 39
39
B
677 694Right-handed alpha
Helix 40
40
B
696 702Right-handed alpha
Helix 41
41
B
711 716Right-handed 310
Helix 42
42
B
736 743Right-handed alpha
Helix 43
43
B
757 763Right-handed alpha
Helix 44
44
B
767 780Right-handed alpha
Helix 45
45
B
784 800Right-handed alpha
Helix 46
46
B
801 813Right-handed alpha
Helix 47
47
B
817 830Right-handed alpha
Helix 48
48
B
830 835Right-handed alpha
Helix 49
49
B
837 841Right-handed 310
Helix 50
50
B
846 880Right-handed alpha
Helix 51
51
B
884 892Right-handed alpha
Helix 52
52
B
905 914Right-handed alpha
Helix 53
53
B
917 924Right-handed alpha
Helix 54
54
B
935 956Right-handed alpha
Helix 55
55
B
972 976Right-handed 310
Helix 56
56
B
1010 1042Right-handed alpha
Helix 57
57
B
1043 1067Right-handed alpha
Helix 58
58
B
1139 1155Right-handed alpha
Helix 59
59
B
1188 1204Right-handed alpha
Helix 60
60
B
1220 1238Right-handed alpha
Helix 61
61
B
1249 1256Right-handed alpha
Helix 62
62
B
1297 1306Right-handed alpha
Helix 63
63
B
1309 1323Right-handed alpha
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There are 12 sheets in PDB entry 2O8D. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
65 67first strand
Strand 2
A
75 81anti-parallel
Strand 3
A
42 46anti-parallel
Strand 4
A
33 38anti-parallel
Strand 5
A
99 105parallel
Strand 6
A
117 123anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
172 179first strand
Strand 2
A
160 167anti-parallel
Strand 3
A
147 151anti-parallel
Strand 4
A
198 201parallel
Strand 5
A
223 226parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
301 302first strand
Strand 2
A
707 712parallel
Strand 3
A
744 748parallel
Strand 4
A
777 781parallel
Strand 5
A
664 668parallel
Strand 6
A
797 806parallel
Strand 7
A
811 819anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
523 525first strand
Strand 2
A
548 553anti-parallel
Strand 3
A
539 545anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
623 625first strand
Strand 2
A
699 703parallel
Strand 3
A
631 637anti-parallel
Strand 4
A
653 658anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
458 462first strand
Strand 2
B
432 436anti-parallel
Strand 3
B
424 429anti-parallel
Strand 4
B
480 485parallel
Strand 5
B
511 517anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
617 621first strand
Strand 2
B
591 597parallel
Strand 3
B
538 546parallel
Strand 4
B
554 561anti-parallel
Strand 5
B
568 575anti-parallel
Strand 6
B
706 708parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
663 664first strand
Strand 2
B
672 673anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
968 970first strand
Strand 2
B
978 981anti-parallel
Strand 3
B
1003 1006anti-parallel
Strand 4
B
994 998anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1078 1079first strand
Strand 2
B
1164 1167parallel
Strand 3
B
1089 1094anti-parallel
Strand 4
B
1111 1115anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1173 1176first strand
Strand 2
B
1209 1213parallel
Strand 3
B
1242 1246parallel
Strand 4
B
1129 1132parallel
Strand 5
B
1262 1263parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1266 1267first strand
Strand 2
B
1289 1290anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il