Analysis of interatomic Contacts of Structural Units in PDB entry:
2O8F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2O8F entry

There are 4 chains in PDB entry 2O8F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 G 1 G 17
F
 C 15 C 32
A
 MET 1GLN 855
B
 PRO 362GLU 1335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 69 helices in PDB entry 2O8F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 25Right-handed alpha
Helix 2
2
A
47 57Right-handed alpha
Helix 3
3
A
82 95Right-handed alpha
Helix 4
4
A
184 195Right-handed alpha
Helix 5
5
A
209 219Right-handed alpha
Helix 6
6
A
263 277Right-handed alpha
Helix 7
7
A
278 282Right-handed 310
Helix 8
8
A
295 299Right-handed 310
Helix 9
9
A
303 311Right-handed alpha
Helix 10
10
A
325 331Right-handed alpha
Helix 11
11
A
335 348Right-handed alpha
Helix 12
12
A
352 368Right-handed alpha
Helix 13
13
A
370 377Right-handed alpha
Helix 14
14
A
380 384Right-handed 310
Helix 15
15
A
386 396Right-handed alpha
Helix 16
16
A
401 413Right-handed alpha
Helix 17
17
A
413 421Right-handed alpha
Helix 18
18
A
436 458Right-handed alpha
Helix 19
19
A
460 466Right-handed 310
Helix 20
20
A
475 504Right-handed alpha
Helix 21
21
A
553 586Right-handed alpha
Helix 22
22
A
589 615Right-handed alpha
Helix 23
23
A
674 692Right-handed alpha
Helix 24
24
A
725 739Right-handed alpha
Helix 25
25
A
755 773Right-handed alpha
Helix 26
26
A
784 793Right-handed 310
Helix 27
27
A
826 834Right-handed alpha
Helix 28
28
A
837 847Right-handed alpha
Helix 29
29
B
366 374Right-handed 310
Helix 30
30
B
399 404Right-handed alpha
Helix 31
31
B
407 420Right-handed alpha
Helix 32
32
B
437 447Right-handed alpha
Helix 33
33
B
465 476Right-handed alpha
Helix 34
34
B
488 498Right-handed alpha
Helix 35
35
B
503 507Right-handed 310
Helix 36
36
B
518 522Right-handed 310
Helix 37
37
B
579 589Right-handed alpha
Helix 38
38
B
604 613Right-handed alpha
Helix 39
39
B
629 640Right-handed alpha
Helix 40
40
B
656 661Right-handed alpha
Helix 41
41
B
677 694Right-handed alpha
Helix 42
42
B
696 701Right-handed alpha
Helix 43
43
B
702 704Right-handed 310
Helix 44
44
B
713 717Right-handed 310
Helix 45
45
B
736 743Right-handed alpha
Helix 46
46
B
757 763Right-handed alpha
Helix 47
47
B
767 780Right-handed alpha
Helix 48
48
B
784 800Right-handed alpha
Helix 49
49
B
801 813Right-handed alpha
Helix 50
50
B
817 830Right-handed alpha
Helix 51
51
B
837 841Right-handed 310
Helix 52
52
B
846 876Right-handed alpha
Helix 53
53
B
877 882Right-handed 310
Helix 54
54
B
884 892Right-handed alpha
Helix 55
55
B
905 914Right-handed alpha
Helix 56
56
B
917 922Right-handed alpha
Helix 57
57
B
935 961Right-handed alpha
Helix 58
58
B
972 976Right-handed 310
Helix 59
59
B
982 986Right-handed 310
Helix 60
60
B
1010 1042Right-handed alpha
Helix 61
61
B
1043 1069Right-handed alpha
Helix 62
62
B
1140 1155Right-handed alpha
Helix 63
63
B
1188 1204Right-handed alpha
Helix 64
64
B
1220 1237Right-handed alpha
Helix 65
65
B
1249 1256Right-handed alpha
Helix 66
66
B
1299 1304Right-handed alpha
Helix 67
67
B
1309 1323Right-handed alpha
Helix 68
68
B
1324 1325Right-handed 310
Helix 69
69
B
1326 1332Right-handed 310
Back to top of page

There are 11 sheets in PDB entry 2O8F. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 67first strand
Strand 2
A
75 81anti-parallel
Strand 3
A
42 46anti-parallel
Strand 4
A
33 38anti-parallel
Strand 5
A
99 105parallel
Strand 6
A
117 123anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 179first strand
Strand 2
A
160 167anti-parallel
Strand 3
A
147 151anti-parallel
Strand 4
A
198 201parallel
Strand 5
A
223 226parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 302first strand
Strand 2
A
707 712parallel
Strand 3
A
744 748parallel
Strand 4
A
777 781parallel
Strand 5
A
664 667parallel
Strand 6
A
797 806parallel
Strand 7
A
811 819anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
511 515first strand
Strand 2
A
521 525anti-parallel
Strand 3
A
549 551anti-parallel
Strand 4
A
543 544anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
623 625first strand
Strand 2
A
699 703parallel
Strand 3
A
631 637anti-parallel
Strand 4
A
653 658anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
458 462first strand
Strand 2
B
432 436anti-parallel
Strand 3
B
424 429anti-parallel
Strand 4
B
480 485parallel
Strand 5
B
511 517anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
617 621first strand
Strand 2
B
591 597parallel
Strand 3
B
538 544parallel
Strand 4
B
555 561anti-parallel
Strand 5
B
568 574anti-parallel
Strand 6
B
706 707parallel
Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
968 970first strand
Strand 2
B
978 981anti-parallel
Strand 3
B
1002 1005anti-parallel
Strand 4
B
998 999anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1078 1079first strand
Strand 2
B
1164 1167parallel
Strand 3
B
1089 1094anti-parallel
Strand 4
B
1111 1115anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1245 1246first strand
Strand 2
B
1129 1133parallel
Strand 3
B
1262 1267parallel
Strand 4
B
1289 1291anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1173 1176first strand
Strand 2
B
1209 1212parallel
Strand 3
B
1242 1243parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il