Analysis of interatomic Contacts of Structural Units in PDB entry:
2O8J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2O8J entry

There are 4 chains in PDB entry 2O8J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 920	ALA 1181
B	ILE 922	LEU 1192
C	ILE 922	ARG 1188
D	ILE 922	ALA 1181

There are 25 helices in PDB entry 2O8J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	967	971	Right-handed 310
Helix 2	2	A	985	991	Right-handed alpha
Helix 3	3	A	1031	1035	Right-handed 310
Helix 4	4	A	1074	1080	Right-handed alpha
Helix 5	5	A	1107	1111	Right-handed 310
Helix 6	6	A	1155	1160	Right-handed alpha
Helix 7	7	B	967	971	Right-handed 310
Helix 8	8	B	985	991	Right-handed alpha
Helix 9	9	B	1031	1035	Right-handed 310
Helix 10	10	B	1074	1080	Right-handed alpha
Helix 11	11	B	1107	1111	Right-handed 310
Helix 12	12	B	1155	1163	Right-handed alpha
Helix 13	13	B	1178	1192	Right-handed alpha
Helix 14	14	C	967	971	Right-handed 310
Helix 15	15	C	985	991	Right-handed alpha
Helix 16	16	C	1031	1035	Right-handed 310
Helix 17	17	C	1074	1078	Right-handed alpha
Helix 18	18	C	1107	1111	Right-handed 310
Helix 19	19	C	1155	1163	Right-handed alpha
Helix 20	20	C	1178	1188	Right-handed alpha
Helix 21	21	D	967	971	Right-handed 310
Helix 22	22	D	985	991	Right-handed alpha
Helix 23	23	D	1031	1035	Right-handed 310
Helix 24	24	D	1074	1080	Right-handed alpha
Helix 25	25	D	1107	1111	Right-handed 310

There are 20 sheets in PDB entry 2O8J. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	922	923	first strand
Strand 2	A	937	938	anti-parallel
Strand 3	A	1040	1044	parallel
Strand 4	A	1050	1054	anti-parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	951	952	first strand
Strand 2	A	1097	1105	parallel
Strand 3	A	1069	1073	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	951	952	first strand
Strand 2	A	1097	1105	parallel
Strand 3	A	1086	1089	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1014	1015	first strand
Strand 2	A	1119	1125	parallel
Strand 3	A	1135	1140	anti-parallel
Strand 4	A	1063	1066	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1112	1113	first strand
Strand 2	A	1151	1152	parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	937	938	first strand
Strand 2	B	1040	1044	parallel
Strand 3	B	1050	1054	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	951	952	first strand
Strand 2	B	1097	1105	parallel
Strand 3	B	1069	1073	anti-parallel
Strand 4	B	957	958	parallel

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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	951	952	first strand
Strand 2	B	1097	1105	parallel
Strand 3	B	1086	1089	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1014	1015	first strand
Strand 2	B	1119	1125	parallel
Strand 3	B	1135	1140	anti-parallel
Strand 4	B	1063	1067	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1112	1113	first strand
Strand 2	B	1151	1152	parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	937	938	first strand
Strand 2	C	1040	1044	parallel
Strand 3	C	1050	1054	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	951	952	first strand
Strand 2	C	1097	1105	parallel
Strand 3	C	1069	1073	anti-parallel
Strand 4	C	957	958	parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	951	952	first strand
Strand 2	C	1097	1105	parallel
Strand 3	C	1086	1088	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1014	1015	first strand
Strand 2	C	1119	1125	parallel
Strand 3	C	1135	1140	anti-parallel
Strand 4	C	1063	1067	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1112	1113	first strand
Strand 2	C	1151	1152	parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	937	938	first strand
Strand 2	D	1040	1044	parallel
Strand 3	D	1050	1054	anti-parallel

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There are 4 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	951	952	first strand
Strand 2	D	1097	1105	parallel
Strand 3	D	1069	1073	anti-parallel
Strand 4	D	957	958	parallel

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There are 3 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	951	952	first strand
Strand 2	D	1097	1105	parallel
Strand 3	D	1086	1088	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1014	1015	first strand
Strand 2	D	1119	1125	parallel
Strand 3	D	1135	1140	anti-parallel
Strand 4	D	1063	1066	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1112	1113	first strand
Strand 2	D	1151	1152	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2O8J

Analysis of interatomic Contacts of Structural Units in PDB entry:
2O8J