Analysis of interatomic Contacts of Structural Units in PDB entry:
2OCC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2OCC entry

There are 26 chains in PDB entry 2OCC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 514
B	MET 1	LEU 227
C	MET 1	SER 261
D	SER 4	LYS 147
E	HIS 5	VAL 109
F	ALA 1	HIS 98
G	ALA 1	LYS 84
H	LYS 7	ILE 85
I	SER 1	LYS 73
J	PHE 1	LYS 58
K	ALA 6	ARG 54
L	SER 1	LYS 47
M	ILE 1	SER 43
N	MET 1	LYS 514
O	MET 1	LEU 227
P	MET 1	SER 261
Q	SER 4	LYS 147
R	HIS 5	VAL 109
S	ALA 1	HIS 98
T	ALA 1	LYS 84
U	LYS 7	ILE 85
V	SER 1	LYS 73
W	PHE 1	LYS 58
X	ALA 6	ARG 54
Y	SER 1	LYS 47
Z	ILE 1	SER 43

There are 98 helices in PDB entry 2OCC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	2	6	Right-handed alpha
Helix 2	2	A	12	41	Right-handed alpha
Helix 3	3	A	51	87	Right-handed alpha
Helix 4	4	A	95	117	Right-handed alpha
Helix 5	5	A	141	170	Right-handed alpha
Helix 6	6	A	183	214	Right-handed alpha
Helix 7	7	A	228	260	Right-handed alpha
Helix 8	8	A	270	283	Right-handed alpha
Helix 9	9	A	299	327	Right-handed alpha
Helix 10	10	A	336	357	Right-handed alpha
Helix 11	11	A	361	367	Right-handed alpha
Helix 12	12	A	371	401	Right-handed alpha
Helix 13	13	A	407	433	Right-handed alpha
Helix 14	14	A	448	479	Right-handed alpha
Helix 15	15	B	15	45	Right-handed alpha
Helix 16	16	B	59	87	Right-handed alpha
Helix 17	17	B	216	225	Right-handed alpha
Helix 18	18	C	16	35	Right-handed alpha
Helix 19	19	C	41	66	Right-handed alpha
Helix 20	20	C	74	106	Right-handed alpha
Helix 21	21	C	129	152	Right-handed alpha
Helix 22	22	C	156	183	Right-handed alpha
Helix 23	23	C	191	223	Right-handed alpha
Helix 24	24	C	233	255	Right-handed alpha
Helix 25	25	D	8	12	Right-handed alpha
Helix 26	26	D	35	43	Right-handed alpha
Helix 27	27	D	53	63	Right-handed alpha
Helix 28	28	D	68	71	Right-handed alpha
Helix 29	29	D	77	102	Right-handed alpha
Helix 30	30	D	113	125	Right-handed alpha
Helix 31	31	E	8	19	Right-handed alpha
Helix 32	32	E	26	36	Right-handed alpha
Helix 33	33	E	45	57	Right-handed alpha
Helix 34	34	E	61	74	Right-handed alpha
Helix 35	35	E	81	95	Right-handed alpha
Helix 36	36	E	101	104	Right-handed alpha
Helix 37	37	F	9	13	Right-handed alpha
Helix 38	38	F	16	25	Right-handed alpha
Helix 39	39	G	13	34	Right-handed alpha
Helix 40	40	H	27	45	Right-handed alpha
Helix 41	41	H	54	63	Right-handed alpha
Helix 42	42	H	66	78	Right-handed alpha
Helix 43	43	I	12	50	Right-handed alpha
Helix 44	44	I	56	65	Right-handed alpha
Helix 45	45	J	5	13	Right-handed alpha
Helix 46	46	J	26	53	Right-handed alpha
Helix 47	47	K	9	35	Right-handed alpha
Helix 48	48	L	18	44	Right-handed alpha
Helix 49	49	M	12	41	Right-handed alpha
Helix 50	50	N	2	6	Right-handed alpha
Helix 51	51	N	12	41	Right-handed alpha
Helix 52	52	N	51	87	Right-handed alpha
Helix 53	53	N	95	117	Right-handed alpha
Helix 54	54	N	141	170	Right-handed alpha
Helix 55	55	N	183	214	Right-handed alpha
Helix 56	56	N	228	260	Right-handed alpha
Helix 57	57	N	270	283	Right-handed alpha
Helix 58	58	N	299	327	Right-handed alpha
Helix 59	59	N	336	357	Right-handed alpha
Helix 60	60	N	361	367	Right-handed alpha
Helix 61	61	N	371	401	Right-handed alpha
Helix 62	62	N	407	433	Right-handed alpha
Helix 63	63	N	448	479	Right-handed alpha
Helix 64	64	O	15	45	Right-handed alpha
Helix 65	65	O	59	87	Right-handed alpha
Helix 66	66	O	216	225	Right-handed alpha
Helix 67	67	P	16	35	Right-handed alpha
Helix 68	68	P	41	66	Right-handed alpha
Helix 69	69	P	74	106	Right-handed alpha
Helix 70	70	P	129	152	Right-handed alpha
Helix 71	71	P	156	183	Right-handed alpha
Helix 72	72	P	191	223	Right-handed alpha
Helix 73	73	P	233	255	Right-handed alpha
Helix 74	74	Q	8	12	Right-handed alpha
Helix 75	75	Q	35	43	Right-handed alpha
Helix 76	76	Q	53	63	Right-handed alpha
Helix 77	77	Q	68	71	Right-handed alpha
Helix 78	78	Q	77	102	Right-handed alpha
Helix 79	79	Q	113	125	Right-handed alpha
Helix 80	80	R	8	19	Right-handed alpha
Helix 81	81	R	26	36	Right-handed alpha
Helix 82	82	R	45	57	Right-handed alpha
Helix 83	83	R	61	74	Right-handed alpha
Helix 84	84	R	81	95	Right-handed alpha
Helix 85	85	R	101	104	Right-handed alpha
Helix 86	86	S	9	13	Right-handed alpha
Helix 87	87	S	16	25	Right-handed alpha
Helix 88	88	T	13	34	Right-handed alpha
Helix 89	89	U	27	45	Right-handed alpha
Helix 90	90	U	54	63	Right-handed alpha
Helix 91	91	U	66	78	Right-handed alpha
Helix 92	92	V	12	50	Right-handed alpha
Helix 93	93	V	56	65	Right-handed alpha
Helix 94	94	W	5	13	Right-handed alpha
Helix 95	95	W	26	53	Right-handed alpha
Helix 96	96	X	9	35	Right-handed alpha
Helix 97	97	Y	18	44	Right-handed alpha
Helix 98	98	Z	12	41	Right-handed alpha

There are 10 sheets in PDB entry 2OCC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	120	first strand
Strand 2	B	105	110	anti-parallel
Strand 3	B	95	102	anti-parallel
Strand 4	B	150	156	parallel
Strand 5	B	180	184	anti-parallel

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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	142	145	first strand
Strand 2	B	209	214	parallel
Strand 3	B	190	194	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	165	first strand
Strand 2	B	170	174	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	47	51	first strand
Strand 2	F	86	93	parallel
Strand 3	F	80	82	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	55	60	first strand
Strand 2	F	70	75	anti-parallel

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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	116	120	first strand
Strand 2	O	105	110	anti-parallel
Strand 3	O	95	102	anti-parallel
Strand 4	O	150	156	parallel
Strand 5	O	180	184	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	142	145	first strand
Strand 2	O	209	214	parallel
Strand 3	O	190	194	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	161	165	first strand
Strand 2	O	170	174	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	47	51	first strand
Strand 2	S	86	93	parallel
Strand 3	S	80	82	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	55	60	first strand
Strand 2	S	70	75	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2OCC

Analysis of interatomic Contacts of Structural Units in PDB entry:
2OCC