Analysis of interatomic Contacts of Structural Units in PDB entry:
2OID


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OID entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 11 chains in PDB entry 2OID (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 164GLU 337
A
 VAL 343MET 344
A
 ARG 347THR 458
B
 ARG 164MET 344
B
 ARG 347ALA 459
C
 HIS 166ALA 335
C
 VAL 343MET 344
C
 ARG 347THR 458
D
 ARG 164GLN 341
D
 VAL 343MET 344
D
 ARG 347ALA 459
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 2OID. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
169 177Right-handed alpha
Helix 2
2
A
184 188Right-handed 310
Helix 3
3
A
233 240Right-handed alpha
Helix 4
4
A
269 275Right-handed alpha
Helix 5
5
A
276 280Right-handed 310
Helix 6
6
A
284 305Right-handed alpha
Helix 7
7
A
313 315Right-handed 310
Helix 8
8
A
351 355Right-handed 310
Helix 9
9
A
365 383Right-handed alpha
Helix 10
10
A
395 397Right-handed 310
Helix 11
11
A
398 405Right-handed alpha
Helix 12
12
A
409 414Right-handed alpha
Helix 13
13
A
422 437Right-handed alpha
Helix 14
14
A
446 457Right-handed alpha
Helix 15
15
B
169 177Right-handed alpha
Helix 16
16
B
227 239Right-handed alpha
Helix 17
17
B
269 275Right-handed alpha
Helix 18
18
B
276 280Right-handed 310
Helix 19
19
B
284 305Right-handed alpha
Helix 20
20
B
351 355Right-handed 310
Helix 21
21
B
356 361Right-handed alpha
Helix 22
22
B
365 383Right-handed alpha
Helix 23
23
B
395 397Right-handed 310
Helix 24
24
B
398 405Right-handed alpha
Helix 25
25
B
409 413Right-handed 310
Helix 26
26
B
422 437Right-handed alpha
Helix 27
27
B
440 444Right-handed 310
Helix 28
28
B
446 459Right-handed alpha
Helix 29
29
C
169 178Right-handed alpha
Helix 30
30
C
235 240Right-handed alpha
Helix 31
31
C
269 275Right-handed alpha
Helix 32
32
C
276 280Right-handed 310
Helix 33
33
C
284 305Right-handed alpha
Helix 34
34
C
313 315Right-handed 310
Helix 35
35
C
351 355Right-handed 310
Helix 36
36
C
356 361Right-handed alpha
Helix 37
37
C
365 383Right-handed alpha
Helix 38
38
C
395 397Right-handed 310
Helix 39
39
C
398 405Right-handed alpha
Helix 40
40
C
409 414Right-handed 310
Helix 41
41
C
422 437Right-handed alpha
Helix 42
42
C
440 444Right-handed 310
Helix 43
43
C
446 458Right-handed alpha
Helix 44
44
D
169 177Right-handed alpha
Helix 45
45
D
231 240Right-handed alpha
Helix 46
46
D
269 275Right-handed alpha
Helix 47
47
D
276 280Right-handed 310
Helix 48
48
D
284 305Right-handed alpha
Helix 49
49
D
351 355Right-handed 310
Helix 50
50
D
356 361Right-handed alpha
Helix 51
51
D
365 383Right-handed alpha
Helix 52
52
D
395 397Right-handed 310
Helix 53
53
D
398 405Right-handed alpha
Helix 54
54
D
409 413Right-handed 310
Helix 55
55
D
422 437Right-handed alpha
Helix 56
56
D
440 444Right-handed 310
Helix 57
57
D
446 457Right-handed alpha
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There are 14 sheets in PDB entry 2OID. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 167first strand
Strand 2
A
248 251parallel
Strand 3
A
260 263anti-parallel
Strand 4
A
208 213anti-parallel
Strand 5
A
201 205anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 195first strand
Strand 2
A
198 199anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
307 308first strand
Strand 2
A
334 335anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 319first strand
Strand 2
A
325 327anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 344first strand
Strand 2
A
363 364anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 167first strand
Strand 2
B
248 252parallel
Strand 3
B
259 263anti-parallel
Strand 4
B
208 214anti-parallel
Strand 5
B
200 205anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
307 308first strand
Strand 2
B
334 335anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
317 319first strand
Strand 2
B
325 327anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
200 205first strand
Strand 2
C
208 213anti-parallel
Strand 3
C
259 263anti-parallel
Strand 4
C
248 252anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
317 319first strand
Strand 2
C
325 327anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
343 344first strand
Strand 2
C
363 364anti-parallel
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There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
166 167first strand
Strand 2
D
248 252parallel
Strand 3
D
258 263anti-parallel
Strand 4
D
209 215anti-parallel
Strand 5
D
199 204anti-parallel
Strand 6
D
191 194anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
307 308first strand
Strand 2
D
334 335anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
317 319first strand
Strand 2
D
325 327anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il