Analysis of interatomic Contacts of Structural Units in PDB entry:
2OJE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OJE entry

There are 8 chains in PDB entry 2OJE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LYS 2ASP 181
B
GLY 1ALA 190
C
PRO 306THR 318
D
SER 0ASP 213
E
LYS 2ASP 181
F
GLY 1ALA 190
G
PRO 306THR 318
H
SER 0ASP 213
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 2OJE. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
45 50Right-handed alpha
Helix 2
2
A
55 77Right-handed alpha
Helix 3
3
B
51 53Right-handed 310
Helix 4
4
B
54 63Right-handed alpha
Helix 5
5
B
64 78Right-handed alpha
Helix 6
6
B
78 87Right-handed alpha
Helix 7
7
B
88 90Right-handed 310
Helix 8
8
D
25 34Right-handed alpha
Helix 9
9
D
43 67Right-handed alpha
Helix 10
10
D
71 93Right-handed alpha
Helix 11
11
D
96 124Right-handed alpha
Helix 12
12
D
125 146Right-handed alpha
Helix 13
13
D
157 168Right-handed alpha
Helix 14
14
D
170 176Right-handed alpha
Helix 15
15
D
176 195Right-handed alpha
Helix 16
16
D
199 204Right-handed alpha
Helix 17
17
D
204 211Right-handed alpha
Helix 18
18
E
45 50Right-handed alpha
Helix 19
19
E
55 77Right-handed alpha
Helix 20
20
F
51 53Right-handed 310
Helix 21
21
F
54 63Right-handed alpha
Helix 22
22
F
64 78Right-handed alpha
Helix 23
23
F
78 87Right-handed alpha
Helix 24
24
F
88 90Right-handed 310
Helix 25
25
H
25 34Right-handed alpha
Helix 26
26
H
43 67Right-handed alpha
Helix 27
27
H
71 93Right-handed alpha
Helix 28
28
H
96 124Right-handed alpha
Helix 29
29
H
125 146Right-handed alpha
Helix 30
30
H
157 168Right-handed alpha
Helix 31
31
H
170 176Right-handed alpha
Helix 32
32
H
176 195Right-handed alpha
Helix 33
33
H
199 203Right-handed 310
Helix 34
34
H
204 211Right-handed alpha
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There are 14 sheets in PDB entry 2OJE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
40 43first strand
Strand 2
A
29 35anti-parallel
Strand 3
A
19 26anti-parallel
Strand 4
A
5 15anti-parallel
Strand 5
B
7 18anti-parallel
Strand 6
B
23 32anti-parallel
Strand 7
B
35 41anti-parallel
Strand 8
B
47 49anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
88 93first strand
Strand 2
A
103 112anti-parallel
Strand 3
A
145 153anti-parallel
Strand 4
A
133 134anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
88 93first strand
Strand 2
A
103 112anti-parallel
Strand 3
A
145 153anti-parallel
Strand 4
A
138 139anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
126 128first strand
Strand 2
A
118 123anti-parallel
Strand 3
A
161 166anti-parallel
Strand 4
A
174 178anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
98 104first strand
Strand 2
B
114 122anti-parallel
Strand 3
B
155 162anti-parallel
Strand 4
B
142 144anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
98 104first strand
Strand 2
B
114 122anti-parallel
Strand 3
B
155 162anti-parallel
Strand 4
B
148 149anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
136 138first strand
Strand 2
B
128 133anti-parallel
Strand 3
B
170 176anti-parallel
Strand 4
B
184 189anti-parallel
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
40 43first strand
Strand 2
E
29 35anti-parallel
Strand 3
E
19 26anti-parallel
Strand 4
E
5 15anti-parallel
Strand 5
F
7 18anti-parallel
Strand 6
F
23 32anti-parallel
Strand 7
F
35 41anti-parallel
Strand 8
F
47 49anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
88 93first strand
Strand 2
E
103 112anti-parallel
Strand 3
E
145 153anti-parallel
Strand 4
E
133 134anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
88 93first strand
Strand 2
E
103 112anti-parallel
Strand 3
E
145 153anti-parallel
Strand 4
E
138 139anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
126 128first strand
Strand 2
E
118 123anti-parallel
Strand 3
E
161 166anti-parallel
Strand 4
E
174 178anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
98 104first strand
Strand 2
F
114 122anti-parallel
Strand 3
F
155 162anti-parallel
Strand 4
F
142 144anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
98 104first strand
Strand 2
F
114 122anti-parallel
Strand 3
F
155 162anti-parallel
Strand 4
F
148 149anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
136 138first strand
Strand 2
F
128 133anti-parallel
Strand 3
F
170 176anti-parallel
Strand 4
F
184 189anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il