Analysis of interatomic Contacts of Structural Units in PDB entry:
2OJW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OJW entry

There are 5 chains in PDB entry 2OJW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 0GLY 365
B
 TYR 0GLY 365
C
 LEU -1GLY 365
D
 TYR 0GLY 365
E
 ALA 5THR 364
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 70 helices in PDB entry 2OJW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 9Right-handed 310
Helix 2
2
A
10 19Right-handed alpha
Helix 3
3
A
53 57Right-handed 310
Helix 4
4
A
71 74Right-handed 310
Helix 5
5
A
113 124Right-handed alpha
Helix 6
6
A
125 128Right-handed 310
Helix 7
7
A
172 187Right-handed alpha
Helix 8
8
A
212 233Right-handed alpha
Helix 9
9
A
258 263Right-handed alpha
Helix 10
10
A
266 279Right-handed alpha
Helix 11
11
A
280 288Right-handed alpha
Helix 12
12
A
295 299Right-handed 310
Helix 13
13
A
326 333Right-handed alpha
Helix 14
14
A
347 360Right-handed alpha
Helix 15
15
B
4 9Right-handed 310
Helix 16
16
B
10 19Right-handed alpha
Helix 17
17
B
53 57Right-handed 310
Helix 18
18
B
71 74Right-handed 310
Helix 19
19
B
113 123Right-handed alpha
Helix 20
20
B
124 128Right-handed 310
Helix 21
21
B
172 187Right-handed alpha
Helix 22
22
B
212 233Right-handed alpha
Helix 23
23
B
258 263Right-handed alpha
Helix 24
24
B
266 279Right-handed alpha
Helix 25
25
B
280 288Right-handed alpha
Helix 26
26
B
295 299Right-handed 310
Helix 27
27
B
326 333Right-handed alpha
Helix 28
28
B
347 360Right-handed alpha
Helix 29
29
C
5 9Right-handed 310
Helix 30
30
C
10 19Right-handed alpha
Helix 31
31
C
53 57Right-handed 310
Helix 32
32
C
71 74Right-handed 310
Helix 33
33
C
113 124Right-handed alpha
Helix 34
34
C
125 128Right-handed 310
Helix 35
35
C
172 187Right-handed alpha
Helix 36
36
C
212 233Right-handed alpha
Helix 37
37
C
258 263Right-handed alpha
Helix 38
38
C
266 279Right-handed alpha
Helix 39
39
C
280 288Right-handed alpha
Helix 40
40
C
293 298Right-handed alpha
Helix 41
41
C
326 333Right-handed alpha
Helix 42
42
C
347 360Right-handed alpha
Helix 43
43
D
5 9Right-handed 310
Helix 44
44
D
10 19Right-handed alpha
Helix 45
45
D
53 57Right-handed 310
Helix 46
46
D
71 74Right-handed 310
Helix 47
47
D
113 124Right-handed alpha
Helix 48
48
D
125 128Right-handed 310
Helix 49
49
D
172 187Right-handed alpha
Helix 50
50
D
212 233Right-handed alpha
Helix 51
51
D
258 263Right-handed alpha
Helix 52
52
D
266 279Right-handed alpha
Helix 53
53
D
280 288Right-handed alpha
Helix 54
54
D
295 299Right-handed 310
Helix 55
55
D
326 333Right-handed alpha
Helix 56
56
D
347 360Right-handed alpha
Helix 57
57
E
5 9Right-handed 310
Helix 58
58
E
10 19Right-handed alpha
Helix 59
59
E
53 57Right-handed 310
Helix 60
60
E
71 74Right-handed 310
Helix 61
61
E
113 123Right-handed alpha
Helix 62
62
E
124 128Right-handed 310
Helix 63
63
E
172 187Right-handed alpha
Helix 64
64
E
212 233Right-handed alpha
Helix 65
65
E
258 263Right-handed alpha
Helix 66
66
E
266 279Right-handed alpha
Helix 67
67
E
280 288Right-handed alpha
Helix 68
68
E
295 299Right-handed 310
Helix 69
69
E
326 333Right-handed alpha
Helix 70
70
E
347 360Right-handed alpha
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There are 10 sheets in PDB entry 2OJW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 63first strand
Strand 2
A
76 86anti-parallel
Strand 3
A
95 102anti-parallel
Strand 4
A
26 33parallel
Strand 5
A
40 47anti-parallel
Strand 6
B
190 195anti-parallel
Strand 7
B
201 210anti-parallel
Strand 8
B
130 140anti-parallel
Strand 9
B
235 237anti-parallel
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There are 12 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 63first strand
Strand 2
A
76 86anti-parallel
Strand 3
A
95 102anti-parallel
Strand 4
A
26 33parallel
Strand 5
A
40 47anti-parallel
Strand 6
B
190 195anti-parallel
Strand 7
B
201 210anti-parallel
Strand 8
B
130 140anti-parallel
Strand 9
B
252 257anti-parallel
Strand 10
B
337 339anti-parallel
Strand 11
B
323 325anti-parallel
Strand 12
B
314 316parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 237first strand
Strand 2
A
130 140anti-parallel
Strand 3
A
252 257anti-parallel
Strand 4
A
337 339anti-parallel
Strand 5
A
323 325anti-parallel
Strand 6
A
314 316parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 237first strand
Strand 2
A
130 140anti-parallel
Strand 3
A
201 210anti-parallel
Strand 4
A
190 195anti-parallel
Strand 5
E
40 47anti-parallel
Strand 6
E
26 33anti-parallel
Strand 7
E
95 102parallel
Strand 8
E
76 86anti-parallel
Strand 9
E
60 63anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 63first strand
Strand 2
B
76 86anti-parallel
Strand 3
B
95 102anti-parallel
Strand 4
B
26 33parallel
Strand 5
B
40 47anti-parallel
Strand 6
C
190 195anti-parallel
Strand 7
C
201 210anti-parallel
Strand 8
C
130 140anti-parallel
Strand 9
C
235 237anti-parallel
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There are 12 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 63first strand
Strand 2
B
76 86anti-parallel
Strand 3
B
95 102anti-parallel
Strand 4
B
26 33parallel
Strand 5
B
40 47anti-parallel
Strand 6
C
190 195anti-parallel
Strand 7
C
201 210anti-parallel
Strand 8
C
130 140anti-parallel
Strand 9
C
252 257anti-parallel
Strand 10
C
337 339anti-parallel
Strand 11
C
323 325anti-parallel
Strand 12
C
314 316parallel
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There are 9 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
60 63first strand
Strand 2
C
76 86anti-parallel
Strand 3
C
95 102anti-parallel
Strand 4
C
26 33parallel
Strand 5
C
40 47anti-parallel
Strand 6
D
190 195anti-parallel
Strand 7
D
201 210anti-parallel
Strand 8
D
130 140anti-parallel
Strand 9
D
235 237anti-parallel
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There are 12 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
60 63first strand
Strand 2
C
76 86anti-parallel
Strand 3
C
95 102anti-parallel
Strand 4
C
26 33parallel
Strand 5
C
40 47anti-parallel
Strand 6
D
190 195anti-parallel
Strand 7
D
201 210anti-parallel
Strand 8
D
130 140anti-parallel
Strand 9
D
252 257anti-parallel
Strand 10
D
337 339anti-parallel
Strand 11
D
323 325anti-parallel
Strand 12
D
314 316parallel
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There are 9 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
60 63first strand
Strand 2
D
76 86anti-parallel
Strand 3
D
95 102anti-parallel
Strand 4
D
26 33parallel
Strand 5
D
40 47anti-parallel
Strand 6
E
190 195anti-parallel
Strand 7
E
201 210anti-parallel
Strand 8
E
130 140anti-parallel
Strand 9
E
235 237anti-parallel
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There are 12 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
60 63first strand
Strand 2
D
76 86anti-parallel
Strand 3
D
95 102anti-parallel
Strand 4
D
26 33parallel
Strand 5
D
40 47anti-parallel
Strand 6
E
190 195anti-parallel
Strand 7
E
201 210anti-parallel
Strand 8
E
130 140anti-parallel
Strand 9
E
252 257anti-parallel
Strand 10
E
337 339anti-parallel
Strand 11
E
323 325anti-parallel
Strand 12
E
314 316parallel
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