Analysis of interatomic Contacts of Structural Units in PDB entry:
2OLY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OLY entry

There are 12 chains in PDB entry 2OLY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 1ASN 21
B
PHE 1PRO 28
C
GLY 1ASN 21
D
PHE 1PRO 28
E
GLY 1ASN 21
F
PHE 1LYS 29
G
GLY 1ASN 21
H
PHE 1LYS 29
I
GLY 1ASN 21
J
PHE 1PRO 28
K
GLY 1ASN 21
L
PHE 1PRO 28
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 2OLY. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
1 7Right-handed alpha
Helix 2
2
A
12 17Right-handed alpha
Helix 3
3
A
18 20Right-handed 310
Helix 4
4
B
1 20Right-handed alpha
Helix 5
5
B
21 23Right-handed 310
Helix 6
6
C
1 7Right-handed alpha
Helix 7
7
C
12 18Right-handed alpha
Helix 8
8
D
1 20Right-handed alpha
Helix 9
9
D
21 23Right-handed 310
Helix 10
10
E
1 7Right-handed alpha
Helix 11
11
E
12 18Right-handed alpha
Helix 12
12
F
2 20Right-handed alpha
Helix 13
13
F
21 23Right-handed 310
Helix 14
14
G
1 9Right-handed alpha
Helix 15
15
G
12 18Right-handed alpha
Helix 16
16
H
2 20Right-handed alpha
Helix 17
17
H
21 23Right-handed 310
Helix 18
18
I
1 7Right-handed alpha
Helix 19
19
I
12 17Right-handed alpha
Helix 20
20
I
18 20Right-handed 310
Helix 21
21
J
2 20Right-handed alpha
Helix 22
22
J
21 23Right-handed 310
Helix 23
23
K
1 7Right-handed alpha
Helix 24
24
K
12 18Right-handed alpha
Helix 25
25
L
1 20Right-handed alpha
Helix 26
26
L
21 23Right-handed 310
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There are 3 sheets in PDB entry 2OLY. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
24 26first strand
Strand 2
J
24 26anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
24 26first strand
Strand 2
H
24 26anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
24 26first strand
Strand 2
L
24 26anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il