Analysis of interatomic Contacts of Structural Units in PDB entry:
2OM5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OM5 entry

There is 1 chain in PDB entry 2OM5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
THR 4ALA 384
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 2OM5. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
71 76Right-handed alpha
Helix 2
2
A
267 271Right-handed 310
Helix 3
3
A
356 360Right-handed 310
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There are 14 sheets in PDB entry 2OM5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
5 11first strand
Strand 2
A
32 36anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
16 19first strand
Strand 2
A
95 102parallel
Strand 3
A
77 85anti-parallel
Strand 4
A
88 91anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
48 49first strand
Strand 2
A
40 45anti-parallel
Strand 3
A
77 85anti-parallel
Strand 4
A
95 102anti-parallel
Strand 5
A
130 131anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
26 29first strand
Strand 2
A
64 68anti-parallel
Strand 3
A
58 61anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
115 116first strand
Strand 2
A
199 200parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
121 123first strand
Strand 2
A
162 164anti-parallel
Strand 3
A
153 155anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
135 140first strand
Strand 2
A
173 183anti-parallel
Strand 3
A
186 191anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
135 140first strand
Strand 2
A
173 183anti-parallel
Strand 3
A
195 197anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
207 213first strand
Strand 2
A
232 236anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
218 222first strand
Strand 2
A
283 294parallel
Strand 3
A
272 280anti-parallel
Strand 4
A
240 245anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
227 230first strand
Strand 2
A
260 263anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
299 301first strand
Strand 2
A
319 320anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
306 309first strand
Strand 2
A
373 383parallel
Strand 3
A
362 368anti-parallel
Strand 4
A
327 332anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
314 317first strand
Strand 2
A
349 352anti-parallel
Strand 3
A
343 346anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il