Analysis of interatomic Contacts of Structural Units in PDB entry:
2OOQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OOQ entry

There are 2 chains in PDB entry 2OOQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 889CYS 1168
B
SER 888CYS 1168
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 2OOQ. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
895 905Right-handed alpha
Helix 2
2
A
910 918Right-handed alpha
Helix 3
3
A
931 938Right-handed 310
Helix 4
4
A
946 950Right-handed 310
Helix 5
5
A
959 964Right-handed 310
Helix 6
6
A
989 1001Right-handed alpha
Helix 7
7
A
1081 1095Right-handed alpha
Helix 8
8
A
1110 1130Right-handed alpha
Helix 9
9
A
1133 1145Right-handed alpha
Helix 10
10
A
1151 1168Right-handed alpha
Helix 11
11
B
895 917Right-handed alpha
Helix 12
12
B
931 938Right-handed 310
Helix 13
13
B
946 950Right-handed 310
Helix 14
14
B
986 988Right-handed 310
Helix 15
15
B
989 1001Right-handed alpha
Helix 16
16
B
1081 1095Right-handed alpha
Helix 17
17
B
1110 1130Right-handed alpha
Helix 18
18
B
1133 1145Right-handed alpha
Helix 19
19
B
1151 1168Right-handed alpha
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There are 6 sheets in PDB entry 2OOQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
891 892first strand
Strand 2
A
1131 1132anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
967 970first strand
Strand 2
A
979 982anti-parallel
Strand 3
A
1102 1105parallel
Strand 4
A
1004 1007parallel
Strand 5
A
1062 1069parallel
Strand 6
A
1046 1055anti-parallel
Strand 7
A
1033 1042anti-parallel
Strand 8
A
1027 1030anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1012 1013first strand
Strand 2
A
1016 1017anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
891 892first strand
Strand 2
B
1131 1132anti-parallel
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There are 8 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
967 970first strand
Strand 2
B
979 982anti-parallel
Strand 3
B
1102 1105parallel
Strand 4
B
1004 1007parallel
Strand 5
B
1061 1069parallel
Strand 6
B
1046 1055anti-parallel
Strand 7
B
1033 1042anti-parallel
Strand 8
B
1027 1030anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1012 1013first strand
Strand 2
B
1016 1017anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il