Analysis of interatomic Contacts of Structural Units in PDB entry:
2OVP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2OVP entry

There are 2 chains in PDB entry 2OVP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 1002TRP 1159
B
 THR 2263MET 2706
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 2OVP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1024 1033Right-handed alpha
Helix 2
2
A
1051 1063Right-handed alpha
Helix 3
3
A
1088 1093Right-handed alpha
Helix 4
4
A
1096 1111Right-handed alpha
Helix 5
5
A
1112 1128Right-handed alpha
Helix 6
6
A
1131 1140Right-handed alpha
Helix 7
7
A
1146 1157Right-handed alpha
Helix 8
8
B
2264 2273Right-handed alpha
Helix 9
9
B
2279 2284Right-handed alpha
Helix 10
10
B
2285 2294Right-handed alpha
Helix 11
11
B
2297 2306Right-handed alpha
Helix 12
12
B
2308 2316Right-handed alpha
Helix 13
13
B
2317 2328Right-handed alpha
Helix 14
14
B
2349 2367Right-handed alpha
Helix 15
15
B
2528 2531Right-handed 310
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There are 9 sheets in PDB entry 2OVP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1013 1016first strand
Strand 2
A
1004 1008anti-parallel
Strand 3
A
1044 1047parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2374 2377first strand
Strand 2
B
2696 2701anti-parallel
Strand 3
B
2681 2687anti-parallel
Strand 4
B
2671 2677anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2384 2390first strand
Strand 2
B
2393 2398anti-parallel
Strand 3
B
2403 2407anti-parallel
Strand 4
B
2413 2416anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2424 2429first strand
Strand 2
B
2433 2438anti-parallel
Strand 3
B
2442 2447anti-parallel
Strand 4
B
2453 2458anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2466 2470first strand
Strand 2
B
2473 2477anti-parallel
Strand 3
B
2482 2487anti-parallel
Strand 4
B
2495 2498anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2504 2509first strand
Strand 2
B
2514 2518anti-parallel
Strand 3
B
2523 2527anti-parallel
Strand 4
B
2532 2537anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2544 2549first strand
Strand 2
B
2553 2558anti-parallel
Strand 3
B
2563 2567anti-parallel
Strand 4
B
2573 2577anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2584 2590first strand
Strand 2
B
2593 2598anti-parallel
Strand 3
B
2603 2607anti-parallel
Strand 4
B
2612 2617anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2627 2632first strand
Strand 2
B
2636 2641anti-parallel
Strand 3
B
2645 2650anti-parallel
Strand 4
B
2656 2662anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il