Analysis of interatomic Contacts of Structural Units in PDB entry:
2OYQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2OYQ entry

There are 13 chains in PDB entry 2OYQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	C 7	G 21
F	G 101	G 114
G	T 11	G 21
H	G 101	G 114
I	A 2	G 5
I	C 7	G 21
J	G 101	G 114
K	A 10	G 21
L	G 101	A 113
A	MET 1	PHE 903
B	MET 1	ASP 899
C	MET 1	MET 900
D	LYS 2	PHE 898

There are133 helices in PDB entry 2OYQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	64	79	Right-handed alpha
Helix 2	2	A	87	97	Right-handed alpha
Helix 3	3	A	104	108	Right-handed 310
Helix 4	4	A	163	169	Right-handed alpha
Helix 5	5	A	170	174	Right-handed 310
Helix 6	6	A	179	184	Right-handed alpha
Helix 7	7	A	193	208	Right-handed alpha
Helix 8	8	A	221	235	Right-handed alpha
Helix 9	9	A	235	240	Right-handed alpha
Helix 10	10	A	241	243	Right-handed 310
Helix 11	11	A	273	281	Right-handed alpha
Helix 12	12	A	289	299	Right-handed alpha
Helix 13	13	A	308	339	Right-handed alpha
Helix 14	14	A	339	352	Right-handed alpha
Helix 15	15	A	354	359	Right-handed 310
Helix 16	16	A	360	375	Right-handed alpha
Helix 17	17	A	414	424	Right-handed alpha
Helix 18	18	A	426	428	Right-handed 310
Helix 19	19	A	438	444	Right-handed alpha
Helix 20	20	A	469	486	Right-handed alpha
Helix 21	21	A	547	572	Right-handed alpha
Helix 22	22	A	579	610	Right-handed alpha
Helix 23	23	A	629	637	Right-handed alpha
Helix 24	24	A	638	641	Right-handed 310
Helix 25	25	A	643	658	Right-handed alpha
Helix 26	26	A	658	674	Right-handed alpha
Helix 27	27	A	730	734	Right-handed 310
Helix 28	28	A	738	755	Right-handed alpha
Helix 29	29	A	756	770	Right-handed alpha
Helix 30	30	A	771	774	Right-handed 310
Helix 31	31	A	787	791	Right-handed alpha
Helix 32	32	A	802	816	Right-handed alpha
Helix 33	33	A	858	866	Right-handed alpha
Helix 34	34	A	867	876	Right-handed alpha
Helix 35	35	A	876	887	Right-handed alpha
Helix 36	36	A	896	901	Right-handed 310
Helix 37	37	B	64	79	Right-handed alpha
Helix 38	38	B	87	97	Right-handed alpha
Helix 39	39	B	163	168	Right-handed alpha
Helix 40	40	B	182	184	Right-handed 310
Helix 41	41	B	193	208	Right-handed alpha
Helix 42	42	B	221	234	Right-handed alpha
Helix 43	43	B	235	240	Right-handed alpha
Helix 44	44	B	241	243	Right-handed 310
Helix 45	45	B	272	281	Right-handed alpha
Helix 46	46	B	289	298	Right-handed alpha
Helix 47	47	B	316	339	Right-handed alpha
Helix 48	48	B	339	352	Right-handed alpha
Helix 49	49	B	354	359	Right-handed 310
Helix 50	50	B	360	375	Right-handed alpha
Helix 51	51	B	414	424	Right-handed alpha
Helix 52	52	B	438	444	Right-handed alpha
Helix 53	53	B	469	490	Right-handed alpha
Helix 54	54	B	547	571	Right-handed alpha
Helix 55	55	B	579	610	Right-handed alpha
Helix 56	56	B	629	637	Right-handed alpha
Helix 57	57	B	638	641	Right-handed 310
Helix 58	58	B	643	658	Right-handed alpha
Helix 59	59	B	658	674	Right-handed alpha
Helix 60	60	B	738	755	Right-handed alpha
Helix 61	61	B	756	774	Right-handed alpha
Helix 62	62	B	775	779	Right-handed 310
Helix 63	63	B	867	876	Right-handed alpha
Helix 64	64	B	876	887	Right-handed alpha
Helix 65	65	C	64	78	Right-handed alpha
Helix 66	66	C	87	97	Right-handed alpha
Helix 67	67	C	163	169	Right-handed alpha
Helix 68	68	C	170	174	Right-handed 310
Helix 69	69	C	193	208	Right-handed alpha
Helix 70	70	C	221	234	Right-handed alpha
Helix 71	71	C	235	240	Right-handed alpha
Helix 72	72	C	241	243	Right-handed 310
Helix 73	73	C	272	281	Right-handed alpha
Helix 74	74	C	289	299	Right-handed alpha
Helix 75	75	C	308	310	Right-handed 310
Helix 76	76	C	311	339	Right-handed alpha
Helix 77	77	C	339	352	Right-handed alpha
Helix 78	78	C	354	359	Right-handed 310
Helix 79	79	C	360	375	Right-handed alpha
Helix 80	80	C	414	424	Right-handed alpha
Helix 81	81	C	438	444	Right-handed alpha
Helix 82	82	C	469	488	Right-handed alpha
Helix 83	83	C	493	502	Right-handed alpha
Helix 84	84	C	524	529	Right-handed alpha
Helix 85	85	C	535	538	Right-handed 310
Helix 86	86	C	539	571	Right-handed alpha
Helix 87	87	C	579	610	Right-handed alpha
Helix 88	88	C	629	637	Right-handed alpha
Helix 89	89	C	638	641	Right-handed 310
Helix 90	90	C	643	658	Right-handed alpha
Helix 91	91	C	658	674	Right-handed alpha
Helix 92	92	C	730	734	Right-handed 310
Helix 93	93	C	738	756	Right-handed alpha
Helix 94	94	C	756	772	Right-handed alpha
Helix 95	95	C	776	780	Right-handed 310
Helix 96	96	C	787	791	Right-handed alpha
Helix 97	97	C	802	816	Right-handed alpha
Helix 98	98	C	855	866	Right-handed alpha
Helix 99	99	C	867	876	Right-handed alpha
Helix 100	100	C	876	888	Right-handed alpha
Helix 101	101	D	42	46	Right-handed 310
Helix 102	102	D	64	79	Right-handed alpha
Helix 103	103	D	87	97	Right-handed alpha
Helix 104	104	D	179	184	Right-handed alpha
Helix 105	105	D	193	203	Right-handed alpha
Helix 106	106	D	204	209	Right-handed alpha
Helix 107	107	D	221	232	Right-handed alpha
Helix 108	108	D	235	243	Right-handed 310
Helix 109	109	D	272	282	Right-handed alpha
Helix 110	110	D	289	298	Right-handed alpha
Helix 111	111	D	311	316	Right-handed alpha
Helix 112	112	D	317	339	Right-handed alpha
Helix 113	113	D	339	351	Right-handed alpha
Helix 114	114	D	355	359	Right-handed 310
Helix 115	115	D	360	374	Right-handed alpha
Helix 116	116	D	414	424	Right-handed alpha
Helix 117	117	D	426	428	Right-handed 310
Helix 118	118	D	438	445	Right-handed alpha
Helix 119	119	D	469	488	Right-handed alpha
Helix 120	120	D	488	500	Right-handed alpha
Helix 121	121	D	535	557	Right-handed alpha
Helix 122	122	D	557	571	Right-handed alpha
Helix 123	123	D	579	609	Right-handed alpha
Helix 124	124	D	629	637	Right-handed alpha
Helix 125	125	D	638	641	Right-handed 310
Helix 126	126	D	644	658	Right-handed alpha
Helix 127	127	D	658	675	Right-handed alpha
Helix 128	128	D	738	754	Right-handed alpha
Helix 129	129	D	756	771	Right-handed alpha
Helix 130	130	D	775	780	Right-handed alpha
Helix 131	131	D	858	866	Right-handed alpha
Helix 132	132	D	867	876	Right-handed alpha
Helix 133	133	D	876	887	Right-handed alpha

There are 38 sheets in PDB entry 2OYQ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	11	first strand
Strand 2	A	14	20	anti-parallel
Strand 3	A	26	31	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	40	first strand
Strand 2	A	57	61	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	50	51	first strand
Strand 2	A	378	379	parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	186	191	first strand
Strand 2	A	145	151	parallel
Strand 3	A	135	140	anti-parallel
Strand 4	A	110	116	anti-parallel
Strand 5	A	212	215	parallel
Strand 6	A	269	272	parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	153	154	first strand
Strand 2	A	157	158	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	254	first strand
Strand 2	A	259	265	anti-parallel

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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	402	403	first strand
Strand 2	A	700	704	anti-parallel
Strand 3	A	707	715	anti-parallel
Strand 4	A	683	689	anti-parallel
Strand 5	A	407	412	anti-parallel
Strand 6	A	624	628	anti-parallel
Strand 7	A	617	621	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	402	403	first strand
Strand 2	A	700	704	anti-parallel
Strand 3	A	707	715	anti-parallel
Strand 4	A	718	728	anti-parallel

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There are 3 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	430	433	first strand
Strand 2	A	461	463	anti-parallel
Strand 3	A	455	457	anti-parallel

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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	781	785	first strand
Strand 2	A	828	834	anti-parallel
Strand 3	A	845	849	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	792	793	first strand
Strand 2	A	796	797	anti-parallel

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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	11	first strand
Strand 2	B	14	20	anti-parallel
Strand 3	B	26	31	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	40	first strand
Strand 2	B	56	61	anti-parallel
Strand 3	B	49	51	anti-parallel
Strand 4	B	378	379	parallel

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There are 5 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	186	191	first strand
Strand 2	B	145	151	parallel
Strand 3	B	133	140	anti-parallel
Strand 4	B	110	117	anti-parallel
Strand 5	B	212	215	parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	153	154	first strand
Strand 2	B	157	158	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	249	first strand
Strand 2	B	264	265	anti-parallel

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There are 7 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	402	403	first strand
Strand 2	B	701	704	anti-parallel
Strand 3	B	707	715	anti-parallel
Strand 4	B	683	689	anti-parallel
Strand 5	B	407	412	anti-parallel
Strand 6	B	624	628	anti-parallel
Strand 7	B	617	621	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	402	403	first strand
Strand 2	B	701	704	anti-parallel
Strand 3	B	707	715	anti-parallel
Strand 4	B	718	728	anti-parallel

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There are 3 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	430	433	first strand
Strand 2	B	461	463	anti-parallel
Strand 3	B	455	457	anti-parallel

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There are 3 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	11	first strand
Strand 2	C	14	20	anti-parallel
Strand 3	C	26	31	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	40	first strand
Strand 2	C	57	61	anti-parallel

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There are 2 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	50	51	first strand
Strand 2	C	378	379	parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	140	first strand
Strand 2	C	110	115	anti-parallel
Strand 3	C	212	214	parallel
Strand 4	C	269	270	parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	151	first strand
Strand 2	C	186	191	parallel

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There are 2 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	248	254	first strand
Strand 2	C	259	265	anti-parallel

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There are 7 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	402	403	first strand
Strand 2	C	700	704	anti-parallel
Strand 3	C	707	715	anti-parallel
Strand 4	C	683	689	anti-parallel
Strand 5	C	407	412	anti-parallel
Strand 6	C	624	628	anti-parallel
Strand 7	C	617	621	anti-parallel

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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	402	403	first strand
Strand 2	C	700	704	anti-parallel
Strand 3	C	707	715	anti-parallel
Strand 4	C	718	728	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	455	457	first strand
Strand 2	C	461	463	anti-parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	781	784	first strand
Strand 2	C	829	834	anti-parallel
Strand 3	C	845	849	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	792	793	first strand
Strand 2	C	796	797	anti-parallel

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There are 3 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	18	20	anti-parallel
Strand 3	D	26	27	anti-parallel

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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	11	first strand
Strand 2	D	14	15	anti-parallel

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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	40	first strand
Strand 2	D	57	61	anti-parallel

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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	50	51	first strand
Strand 2	D	378	379	parallel

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There are 5 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	150	first strand
Strand 2	D	135	140	anti-parallel
Strand 3	D	110	116	anti-parallel
Strand 4	D	212	214	parallel
Strand 5	D	269	270	parallel

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There are 6 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	617	621	first strand
Strand 2	D	624	627	anti-parallel
Strand 3	D	407	412	anti-parallel
Strand 4	D	683	689	anti-parallel
Strand 5	D	707	715	anti-parallel
Strand 6	D	701	704	anti-parallel

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There are 6 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	617	621	first strand
Strand 2	D	624	627	anti-parallel
Strand 3	D	407	412	anti-parallel
Strand 4	D	683	689	anti-parallel
Strand 5	D	707	715	anti-parallel
Strand 6	D	718	727	anti-parallel

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There are 3 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	430	432	first strand
Strand 2	D	461	463	anti-parallel
Strand 3	D	455	457	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2OYQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
2OYQ