Analysis of interatomic Contacts of Structural Units in PDB entry:
2P28


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2P28 entry

There are 2 chains in PDB entry 2P28 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLN 1ALA 100
B
LYS 340HIS 556
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 7 helices in PDB entry 2P28. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
10 18Right-handed alpha
Helix 2
2
A
26 30Right-handed 310
Helix 3
3
A
35 38Right-handed 310
Helix 4
4
A
42 48Right-handed alpha
Helix 5
5
A
52 54Right-handed 310
Helix 6
6
B
468 476Right-handed 310
Helix 7
7
B
482 486Right-handed 310
Back to top of page

There are 10 sheets in PDB entry 2P28. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
40 41first strand
Strand 2
A
22 24anti-parallel
Strand 3
A
56 57anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
62 67first strand
Strand 2
A
80 85anti-parallel
Strand 3
B
414 421parallel
Strand 4
B
402 408anti-parallel
Strand 5
B
345 349anti-parallel
Strand 6
B
376 378anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
76 77first strand
Strand 2
A
91 97anti-parallel
Strand 3
B
387 395anti-parallel
Strand 4
B
356 363anti-parallel
Strand 5
B
369 373anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
441 444first strand
Strand 2
B
447 450anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
454 455first strand
Strand 2
B
461 462anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
488 491first strand
Strand 2
B
494 497anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
507 508first strand
Strand 2
B
514 515anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
521 522first strand
Strand 2
B
525 526anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
533 536first strand
Strand 2
B
539 542anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
546 547first strand
Strand 2
B
553 554anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il