Analysis of interatomic Contacts of Structural Units in PDB entry:
2P80


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2P80 entry

There are 4 chains in PDB entry 2P80 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
THR 5GLY 339
B
ALA 4GLY 339
C
ALA 4GLY 339
D
GLU 1LYS 123
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 2P80. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
5 12Right-handed alpha
Helix 2
2
A
105 112Right-handed 310
Helix 3
3
A
141 148Right-handed alpha
Helix 4
4
A
199 201Right-handed 310
Helix 5
5
A
202 212Right-handed alpha
Helix 6
6
A
228 232Right-handed 310
Helix 7
7
A
307 313Right-handed alpha
Helix 8
8
B
5 11Right-handed alpha
Helix 9
9
B
105 112Right-handed 310
Helix 10
10
B
141 148Right-handed alpha
Helix 11
11
B
198 201Right-handed 310
Helix 12
12
B
202 212Right-handed alpha
Helix 13
13
B
228 232Right-handed 310
Helix 14
14
B
307 313Right-handed alpha
Helix 15
15
C
5 11Right-handed alpha
Helix 16
16
C
105 109Right-handed 310
Helix 17
17
C
141 148Right-handed alpha
Helix 18
18
C
199 201Right-handed 310
Helix 19
19
C
202 212Right-handed alpha
Helix 20
20
C
228 232Right-handed 310
Helix 21
21
C
307 313Right-handed alpha
Helix 22
22
D
81 85Right-handed 310
Helix 23
23
D
98 105Right-handed alpha
Helix 24
24
D
108 121Right-handed alpha
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There are 23 sheets in PDB entry 2P80. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
14 16first strand
Strand 2
A
38 51parallel
Strand 3
A
58 64anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
14 16first strand
Strand 2
A
38 51parallel
Strand 3
A
80 87parallel
Strand 4
A
118 125anti-parallel
Strand 5
B
331 338anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
73 76first strand
Strand 2
A
154 157parallel
Strand 3
A
130 132anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
98 99first strand
Strand 2
A
134 135anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
162 163first strand
Strand 2
A
169 170anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
217 220first strand
Strand 2
A
174 183anti-parallel
Strand 3
A
240 247parallel
Strand 4
A
287 294anti-parallel
Strand 5
A
261 265anti-parallel
Strand 6
A
275 278anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
233 236first strand
Strand 2
A
317 323parallel
Strand 3
A
299 304anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
331 338first strand
Strand 2
C
118 125anti-parallel
Strand 3
C
80 87anti-parallel
Strand 4
C
38 51parallel
Strand 5
C
14 16parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
331 338first strand
Strand 2
C
118 125anti-parallel
Strand 3
C
80 87anti-parallel
Strand 4
C
38 51parallel
Strand 5
C
58 64anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
14 16first strand
Strand 2
B
38 51parallel
Strand 3
B
58 64anti-parallel
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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
14 16first strand
Strand 2
B
38 51parallel
Strand 3
B
80 87parallel
Strand 4
B
118 125anti-parallel
Strand 5
C
331 338anti-parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
73 76first strand
Strand 2
B
154 157parallel
Strand 3
B
130 132anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
98 99first strand
Strand 2
B
134 135anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
162 163first strand
Strand 2
B
169 170anti-parallel
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There are 6 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
217 220first strand
Strand 2
B
174 183anti-parallel
Strand 3
B
240 247parallel
Strand 4
B
287 294anti-parallel
Strand 5
B
261 265anti-parallel
Strand 6
B
275 278anti-parallel
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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
233 236first strand
Strand 2
B
317 323parallel
Strand 3
B
299 304anti-parallel
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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
73 76first strand
Strand 2
C
154 157parallel
Strand 3
C
130 132anti-parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
98 99first strand
Strand 2
C
134 135anti-parallel
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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
162 163first strand
Strand 2
C
169 170anti-parallel
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There are 6 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
217 220first strand
Strand 2
C
174 183anti-parallel
Strand 3
C
240 247parallel
Strand 4
C
287 294anti-parallel
Strand 5
C
261 265anti-parallel
Strand 6
C
275 278anti-parallel
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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
233 236first strand
Strand 2
C
317 323parallel
Strand 3
C
299 304anti-parallel
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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
14 19first strand
Strand 2
D
2 11anti-parallel
Strand 3
D
30 35parallel
Strand 4
D
64 67anti-parallel
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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
22 25first strand
Strand 2
D
87 92parallel
Strand 3
D
72 77anti-parallel
Strand 4
D
43 44anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il