Analysis of interatomic Contacts of Structural Units in PDB entry:
2PJR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2PJR entry

There are 8 chains in PDB entry 2PJR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 T 13 T 17
D
 T 13 T 17
H
 G 1 C 2
I
 A 30 C 34
A
 GLN 7ASP 548
B
 GLY 556SER 650
F
 LEU 704LEU 1247
G
 GLY 1248SER 1342
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 75 helices in PDB entry 2PJR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 22Right-handed alpha
Helix 2
2
A
36 51Right-handed alpha
Helix 3
3
A
55 57Right-handed 310
Helix 4
4
A
65 76Right-handed alpha
Helix 5
5
A
82 87Right-handed 310
Helix 6
6
A
92 104Right-handed alpha
Helix 7
7
A
105 108Right-handed 310
Helix 8
8
A
117 131Right-handed alpha
Helix 9
9
A
140 154Right-handed alpha
Helix 10
10
A
157 163Right-handed alpha
Helix 11
11
A
171 187Right-handed alpha
Helix 12
12
A
193 206Right-handed alpha
Helix 13
13
A
206 215Right-handed alpha
Helix 14
14
A
224 228Right-handed 310
Helix 15
15
A
229 240Right-handed alpha
Helix 16
16
A
251 255Right-handed 310
Helix 17
17
A
257 261Right-handed 310
Helix 18
18
A
263 268Right-handed alpha
Helix 19
19
A
269 274Right-handed alpha
Helix 20
20
A
289 301Right-handed alpha
Helix 21
21
A
328 341Right-handed alpha
Helix 22
22
A
341 347Right-handed alpha
Helix 23
23
A
360 363Right-handed 310
Helix 24
24
A
364 375Right-handed alpha
Helix 25
25
A
385 388Right-handed 310
Helix 26
26
A
389 404Right-handed alpha
Helix 27
27
A
407 415Right-handed alpha
Helix 28
28
A
423 436Right-handed alpha
Helix 29
29
A
440 447Right-handed alpha
Helix 30
30
A
455 475Right-handed alpha
Helix 31
31
A
479 491Right-handed alpha
Helix 32
32
A
492 501Right-handed alpha
Helix 33
33
A
502 523Right-handed alpha
Helix 34
34
A
530 539Right-handed alpha
Helix 35
35
B
588 591Right-handed 310
Helix 36
36
B
593 609Right-handed alpha
Helix 37
37
B
635 641Right-handed 310
Helix 38
38
B
642 644Right-handed 310
Helix 39
39
F
713 722Right-handed alpha
Helix 40
40
F
736 744Right-handed alpha
Helix 41
41
F
744 749Right-handed alpha
Helix 42
42
F
755 757Right-handed 310
Helix 43
43
F
765 770Right-handed alpha
Helix 44
44
F
770 777Right-handed alpha
Helix 45
45
F
792 804Right-handed alpha
Helix 46
46
F
805 808Right-handed 310
Helix 47
47
F
817 830Right-handed alpha
Helix 48
48
F
840 853Right-handed alpha
Helix 49
49
F
857 864Right-handed alpha
Helix 50
50
F
868 887Right-handed alpha
Helix 51
51
F
891 906Right-handed alpha
Helix 52
52
F
906 917Right-handed alpha
Helix 53
53
F
924 928Right-handed 310
Helix 54
54
F
929 940Right-handed alpha
Helix 55
55
F
951 955Right-handed 310
Helix 56
56
F
964 969Right-handed alpha
Helix 57
57
F
969 974Right-handed alpha
Helix 58
58
F
989 1001Right-handed alpha
Helix 59
59
F
1028 1045Right-handed alpha
Helix 60
60
F
1050 1052Right-handed 310
Helix 61
61
F
1060 1063Right-handed 310
Helix 62
62
F
1064 1074Right-handed alpha
Helix 63
63
F
1085 1088Right-handed 310
Helix 64
64
F
1089 1104Right-handed alpha
Helix 65
65
F
1107 1115Right-handed alpha
Helix 66
66
F
1123 1134Right-handed alpha
Helix 67
67
F
1140 1146Right-handed alpha
Helix 68
68
F
1157 1175Right-handed alpha
Helix 69
69
F
1179 1189Right-handed alpha
Helix 70
70
F
1192 1198Right-handed alpha
Helix 71
71
F
1204 1223Right-handed alpha
Helix 72
72
F
1230 1241Right-handed alpha
Helix 73
73
G
1280 1284Right-handed 310
Helix 74
74
G
1289 1301Right-handed alpha
Helix 75
75
G
1329 1333Right-handed 310
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There are 8 sheets in PDB entry 2PJR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 91first strand
Strand 2
A
59 63parallel
Strand 3
A
219 222parallel
Strand 4
A
246 250parallel
Strand 5
A
27 31parallel
Strand 6
A
278 282parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 116first strand
Strand 2
A
189 191parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
284 285first strand
Strand 2
A
312 313parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
378 380first strand
Strand 2
B
559 563parallel
Strand 3
A
354 358parallel
Strand 4
B
572 577parallel
Strand 5
B
611 620parallel
Strand 6
A
321 326parallel
Strand 7
B
646 648parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
788 791first strand
Strand 2
F
759 763parallel
Strand 3
F
919 922parallel
Strand 4
F
946 950parallel
Strand 5
F
727 731parallel
Strand 6
F
978 982parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
814 815first strand
Strand 2
F
889 890parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
984 985first strand
Strand 2
F
1012 1013parallel
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There are 7 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
1078 1080first strand
Strand 2
G
1251 1255parallel
Strand 3
F
1054 1058parallel
Strand 4
G
1264 1269parallel
Strand 5
G
1303 1312parallel
Strand 6
F
1021 1026parallel
Strand 7
G
1338 1340parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il